| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr2g099980.1 |
| Family | GH28 |
| Protein Properties | Length: 549 Molecular Weight: 62386.9 Isoelectric Point: 7.816 |
| Chromosome | Chromosome/Scaffold: 2 Start: 31744857 End: 31749765 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH28 | 435 | 547 | 3.4e-22 |
| SNEEPVEYITVRNRTLRNTDNGLRIKTWDIIMNNFSNPVIIDQEYCPWNQCSKFSSKIKISKVTFKNIMGIFATQNCVVLIRSNGVPYEEVVLSNIDLTF NGVTVNATCANVK | |||
| Full Sequence |
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| Protein Sequence Length: 549 Download |
| MWETGFPGSR RILKKLRPSM PDSARQDKDN NEAVEGEDMF DDIPDCVVRH ILSFMETKDA 60 VRTCVLSKRW TCLWTSVPSL NFNSKSFSRL ADFRKFVLWV LFRRDSSAVK VLTYCRAGVD 120 YATDQNLFNK VIDHATSRGV EEIRVNLRAK VHGSPPVDIP LSLLKCESLK RLELKDCHPM 180 KVTWPLACVP EIKLLRLEHF TMDHARLDFS KSFATLGNLF GFATLTTLNL SNLILCCTGN 240 ESLNPIGSCV NLKNLYLREV CFKSELVPND FMISAPQLNN LTLMCNRFKC KLVIDAPQLI 300 NFSYLYSSPC AFFEFSIPSA NNLTIDIREP NNNLEESHQK TREKTCHGLI NMSRECHDAE 360 LSFSTTMVSC GTAVMPKEEC STKEECSTLR KLKSLNLSVG STYKIFISDL DHITAYFRRC 420 SQHEDFEIIF QGVCSNEEPV EYITVRNRTL RNTDNGLRIK TWDIIMNNFS NPVIIDQEYC 480 PWNQCSKFSS KIKISKVTFK NIMGIFATQN CVVLIRSNGV PYEEVVLSNI DLTFNGVTVN 540 ATCANVKP* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 4.0e-12 | 440 | 547 | 121 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-12 | 432 | 543 | 127 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 9.0e-17 | 436 | 545 | 126 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-20 | 436 | 547 | 131 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 5.0e-25 | 435 | 547 | 126 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005515 | protein binding |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO62938.1 | 3e-32 | 387 | 548 | 205 | 382 | polygalactorunase PG11 precursor [Medicago sativa] |
| GenBank | ABD28502.1 | 0 | 1 | 429 | 1 | 429 | Cyclin-like F-box [Medicago truncatula] |
| GenBank | ABN05818.1 | 0 | 466 | 548 | 1 | 83 | Virulence factor, pectin lyase fold [Medicago truncatula] |
| EMBL | CAA72003.1 | 2e-33 | 387 | 548 | 203 | 380 | polygalacturonase [Medicago sativa] |
| Swiss-Prot | Q40312 | 2e-31 | 387 | 548 | 205 | 382 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO786348 | 409 | 13 | 418 | 0 |
| GW583478 | 305 | 122 | 423 | 0 |
| FE708901 | 234 | 199 | 429 | 0 |
| FE708902 | 190 | 24 | 213 | 0 |
| FF545902 | 241 | 192 | 429 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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