| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10038316 |
| Family | GH28 |
| Protein Properties | Length: 101 Molecular Weight: 11116.6 Isoelectric Point: 4.9774 |
| Chromosome | Chromosome/Scaffold: 28 Start: 674705 End: 675007 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 12 | 96 | 3.1e-26 |
| PGEATNVHFEDIIMNNVSNPIIIDQTYFPGHTCGPNRISSKVEISNVVFKNIKGTSKFEVAVFMNCSQLIPCDNIQMSDIDLTLR | |||
| Full Sequence |
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| Protein Sequence Length: 101 Download |
| MASGSSWPDL HPGEATNVHF EDIIMNNVSN PIIIDQTYFP GHTCGPNRIS SKVEISNVVF 60 KNIKGTSKFE VAVFMNCSQL IPCDNIQMSD IDLTLRERSC * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-16 | 13 | 100 | 88 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-18 | 13 | 93 | 81 | + Probable polygalacturonase | ||
| PLN02155 | PLN02155 | 1.0e-18 | 6 | 94 | 89 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-25 | 6 | 94 | 89 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-25 | 14 | 96 | 83 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAA89477.1 | 8e-24 | 6 | 93 | 278 | 364 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89478.1 | 2e-24 | 6 | 93 | 278 | 364 | polygalacturonase [Salix gilgiana] |
| DDBJ | BAA89479.1 | 2e-24 | 6 | 93 | 278 | 364 | polygalacturonase [Salix gilgiana] |
| RefSeq | XP_002274096.1 | 3e-24 | 6 | 95 | 278 | 366 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002310765.1 | 8e-26 | 6 | 93 | 276 | 362 | predicted protein [Populus trichocarpa] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GW619150 | 88 | 6 | 93 | 5e-28 |
| GW616557 | 88 | 6 | 93 | 7e-28 |
| GW615660 | 88 | 6 | 93 | 8e-28 |
| EH744865 | 89 | 6 | 94 | 6e-27 |
| CU617665 | 91 | 6 | 96 | 8e-27 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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