| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.A01063.1 |
| Family | GH28 |
| Protein Properties | Length: 175 Molecular Weight: 18133.5 Isoelectric Point: 7.3104 |
| Chromosome | Chromosome/Scaffold: 1 Start: 16366365 End: 16367337 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH28 | 1 | 154 | 0 |
| MTITGVTCGPGHGISVGSLGKYPNEQPVTGLHVKNCTMTGTMNGLRIKTWPASPAGTASDMHFEDITLDNVGNPVIIDQQYCPWNQCKSQAPSQIKISNV SFSRIRGTSSTQAAVTLACSSRLPCTEVEISDIDIAYHGPEGPATSVCSNVKPT | |||
| Full Sequence |
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| Protein Sequence Length: 175 Download |
| MTITGVTCGP GHGISVGSLG KYPNEQPVTG LHVKNCTMTG TMNGLRIKTW PASPAGTASD 60 MHFEDITLDN VGNPVIIDQQ YCPWNQCKSQ APSQIKISNV SFSRIRGTSS TQAAVTLACS 120 SRLPCTEVEI SDIDIAYHGP EGPATSVCSN VKPTISGKQN PAICASAAAS PVSQ* 180 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 3.0e-35 | 1 | 152 | 152 | + polygalacturonase | ||
| PLN02155 | PLN02155 | 2.0e-35 | 3 | 164 | 162 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 2.0e-35 | 1 | 174 | 175 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-54 | 3 | 156 | 154 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 3.0e-64 | 1 | 165 | 166 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI22049.1 | 0 | 1 | 163 | 171 | 333 | unnamed protein product [Vitis vinifera] |
| Swiss-Prot | P24548 | 0 | 1 | 169 | 191 | 359 | PGLR_OENOR RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase |
| RefSeq | XP_002282563.1 | 0 | 1 | 165 | 231 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282573.1 | 0 | 1 | 165 | 231 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282594.1 | 0 | 1 | 165 | 231 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2iq7_G | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_D | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_C | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HS262336 | 160 | 1 | 160 | 0 |
| HS017114 | 160 | 1 | 160 | 0 |
| CU617665 | 168 | 1 | 168 | 0 |
| CU533490 | 162 | 7 | 168 | 0 |
| CU615686 | 163 | 6 | 168 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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