| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028619 |
| Family | CE8 |
| Protein Properties | Length: 559 Molecular Weight: 61174.3 Isoelectric Point: 7.4096 |
| Chromosome | Chromosome/Scaffold: 02 Start: 1326772 End: 1328950 |
| Description | Plant invertase/pectin methylesterase inhibitor superfamily |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 248 | 550 | 0 |
| DVTVCKTGKCGYKTVQEAVNAAPEDNGAVKFVIKISEGVYEETVRVPFEKRNVVFIGDGMGKTVITGSLNAGMPGITTYNTATVGVVGDGFMARDLTFQN TAGPDAHQAVAFRSDSDFSLLENCEFLGNQDTLYAHGLRQFYKKCRIQGNVDFIFGNSASVFQECEILIAPRQLKPEKGEKNAVTAQGRVDPSQSTGFVF LNCLINGTEEYMKLYKAKPKVHKNYLGRPWKEFSRTVFIGCDLEALIIPDGWLPWTGEFALKTLYYGESKNTGSGSDRSKRVSWSSEIPDEHVNVYSVAN FIQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 559 Download |
| MPSSKPLHHP LFSSAKSHRR KLPIRCFCLL IAAMSSILIL LISLFLFASP SSSAAQIRLA 60 CKATRYPDQC LTSLSEPGRV PPDPSPSQII HSAIAASSQA LETAQSKVKS ILDSSAGNLD 120 RTNAANTCLQ LLSYSEQRTR STDQALTRGE IKNARAWLSA ALVYQYDTWS ALKYVNDTKQ 180 VGETMSFLDG LIHVTSNALS MMVSYDNFGD NVASWTPPRT ERDGFWEKTG PGLGSEPNLG 240 FPSGLKEDVT VCKTGKCGYK TVQEAVNAAP EDNGAVKFVI KISEGVYEET VRVPFEKRNV 300 VFIGDGMGKT VITGSLNAGM PGITTYNTAT VGVVGDGFMA RDLTFQNTAG PDAHQAVAFR 360 SDSDFSLLEN CEFLGNQDTL YAHGLRQFYK KCRIQGNVDF IFGNSASVFQ ECEILIAPRQ 420 LKPEKGEKNA VTAQGRVDPS QSTGFVFLNC LINGTEEYMK LYKAKPKVHK NYLGRPWKEF 480 SRTVFIGCDL EALIIPDGWL PWTGEFALKT LYYGESKNTG SGSDRSKRVS WSSEIPDEHV 540 NVYSVANFIQ ADEWALSG* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02745 | PLN02745 | 8.0e-103 | 57 | 552 | 526 | + Putative pectinesterase/pectinesterase inhibitor | ||
| PLN02713 | PLN02713 | 1.0e-103 | 125 | 554 | 461 | + Probable pectinesterase/pectinesterase inhibitor | ||
| PLN02301 | PLN02301 | 2.0e-116 | 128 | 554 | 440 | + pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 7.0e-166 | 248 | 552 | 308 | + Pectinesterase. | ||
| PLN02708 | PLN02708 | 0 | 56 | 555 | 504 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAB09534.1 | 0 | 1 | 555 | 1 | 573 | pectin methylesterase-like protein [Arabidopsis thaliana] |
| DDBJ | BAF42039.1 | 0 | 52 | 554 | 70 | 572 | pectin methylesterase 2 [Pyrus communis] |
| RefSeq | NP_196538.1 | 0 | 49 | 555 | 36 | 547 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | NP_568991.2 | 0 | 55 | 555 | 91 | 598 | pectinesterase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002281640.1 | 0 | 49 | 554 | 43 | 550 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 243 | 531 | 3 | 281 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 248 | 557 | 4 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_B | 1e-16 | 259 | 505 | 18 | 285 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntq_A | 1e-16 | 259 | 505 | 18 | 285 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 2ntp_B | 1e-16 | 259 | 505 | 18 | 285 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
