| Basic Information | |
|---|---|
| Species | Brassica rapa |
| Cazyme ID | Bra028885 |
| Family | AA1 |
| Protein Properties | Length: 541 Molecular Weight: 60266.1 Isoelectric Point: 7.9305 |
| Chromosome | Chromosome/Scaffold: 02 Start: 1588093 End: 1590458 |
| Description | laccase 8 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA1 | 2 | 515 | 0 |
| IPSVNRSLPGPTINVREGDTLVVHVINNSTYNITIHWHGVFQRNSPWMDGANMITQCPIQPGYNFTYRFDITGQEGTLLWHAHVVNLRATLHGAIIIRPR SGRPYPFPKPYKEVPIIFAQWWNVDLAVLQLRPAPIADAFLINGLAGDTYSCSKNRMYNLKVVQGKTYLLRIINAALNTHLFFKIANHNVTVVAIDAAYT TPYVSDVMILTPGQTVDALLTADQPIGLYYMTISAYISAHPIVPVPTDRTINGLIVYEGAALNTSPAKTTMPEGMNQISTAHRFSSNITSLVDGPHWTPV PRHVDEKMFITMGLGLDPCPLGTKCIGPLGQRYAGSLNNRTFAIPQTLSLQEAYFYNISGIYTDDFPNQPPLKFDYTNFEVSGDNEYKMLFPERKTSVKK LKFNSTVELIVQNTGIITSESHPMHLHGFNFYVLGYGFGNYDPINDARKLNLVNPQMRNTVGVPPGGWVVLRFIANNPGAWMFHCHMDAHLPYGIIMAFI VQNGPTPETSLQPP | |||
| Full Sequence |
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| Protein Sequence Length: 541 Download |
| MIPSVNRSLP GPTINVREGD TLVVHVINNS TYNITIHWHG VFQRNSPWMD GANMITQCPI 60 QPGYNFTYRF DITGQEGTLL WHAHVVNLRA TLHGAIIIRP RSGRPYPFPK PYKEVPIIFA 120 QWWNVDLAVL QLRPAPIADA FLINGLAGDT YSCSKNRMYN LKVVQGKTYL LRIINAALNT 180 HLFFKIANHN VTVVAIDAAY TTPYVSDVMI LTPGQTVDAL LTADQPIGLY YMTISAYISA 240 HPIVPVPTDR TINGLIVYEG AALNTSPAKT TMPEGMNQIS TAHRFSSNIT SLVDGPHWTP 300 VPRHVDEKMF ITMGLGLDPC PLGTKCIGPL GQRYAGSLNN RTFAIPQTLS LQEAYFYNIS 360 GIYTDDFPNQ PPLKFDYTNF EVSGDNEYKM LFPERKTSVK KLKFNSTVEL IVQNTGIITS 420 ESHPMHLHGF NFYVLGYGFG NYDPINDARK LNLVNPQMRN TVGVPPGGWV VLRFIANNPG 480 AWMFHCHMDA HLPYGIIMAF IVQNGPTPET SLQPPPSNLP QCTRDPKIYE SPTTNVDLSY 540 * |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam07732 | Cu-oxidase_3 | 1.0e-44 | 5 | 103 | 101 | + Multicopper oxidase. This entry contains many divergent copper oxidase-like domains that are not recognised by the pfam00394 model. | ||
| PLN02191 | PLN02191 | 2.0e-60 | 4 | 501 | 541 | + L-ascorbate oxidase | ||
| PLN02604 | PLN02604 | 3.0e-80 | 1 | 500 | 541 | + oxidoreductase | ||
| TIGR03388 | ascorbase | 3.0e-84 | 4 | 500 | 535 | + L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases. | ||
| TIGR03389 | laccase | 0 | 2 | 522 | 528 | + laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005507 | copper ion binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_195724.1 | 0 | 1 | 540 | 47 | 584 | LAC8 (laccase 8); laccase [Arabidopsis thaliana] |
| RefSeq | NP_195725.1 | 0 | 1 | 540 | 47 | 586 | laccase family protein / diphenol oxidase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002308196.1 | 0 | 1 | 522 | 44 | 562 | laccase 110a [Populus trichocarpa] |
| RefSeq | XP_002322939.1 | 0 | 1 | 522 | 44 | 569 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527888.1 | 0 | 1 | 522 | 17 | 540 | laccase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1asq_B | 0 | 1 | 500 | 23 | 521 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 1asq_A | 0 | 1 | 500 | 23 | 521 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 1asp_B | 0 | 1 | 500 | 23 | 521 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 1asp_A | 0 | 1 | 500 | 23 | 521 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| PDB | 1aso_B | 0 | 1 | 500 | 23 | 521 | A Chain A, The Crystal Structure Of A Cyanogenic Beta-Glucosidase From White Clover (Trifolium Repens L.), A Family 1 Glycosyl-Hydrolase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO797675 | 505 | 26 | 522 | 0 |
| DY271840 | 335 | 137 | 468 | 0 |
| DY270228 | 317 | 75 | 385 | 0 |
| FC894406 | 302 | 137 | 436 | 0 |
| DY941206 | 309 | 170 | 478 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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