Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g38260.1 |
Family | AA7 |
Protein Properties | Length: 523 Molecular Weight: 57840.5 Isoelectric Point: 9.3977 |
Chromosome | Chromosome/Scaffold: 1 Start: 34450579 End: 34452181 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 67 | 306 | 0 |
NSRWSSPQNVKPLYIVTPTNVSHIQSAVVCGRRHGVRIRVRSGGHDYEGLSYRSERAESFAVVDLNMMRAVSVDANARTAWVESGAQIGELYYAISKASP SLAFPAGVCPSIGVGGHFSGGGFGMLLRKFGIAAENVLDAKLVDANGKLHDRKSMGEDHFWAIRGGGGESFGIVVGWEVKLLPVPPVVTVFKVSKTLKDG AIDIVNKWQTVAPALPGDLMIRILAMAQQATFEGMYLGTC |
Full Sequence |
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Protein Sequence Length: 523 Download |
MARSRAFALV LLFCALSSSC HVAFSYPPVL APKEDFLACL VKEIPPRLLY AKSSPAYPTV 60 LSATIRNSRW SSPQNVKPLY IVTPTNVSHI QSAVVCGRRH GVRIRVRSGG HDYEGLSYRS 120 ERAESFAVVD LNMMRAVSVD ANARTAWVES GAQIGELYYA ISKASPSLAF PAGVCPSIGV 180 GGHFSGGGFG MLLRKFGIAA ENVLDAKLVD ANGKLHDRKS MGEDHFWAIR GGGGESFGIV 240 VGWEVKLLPV PPVVTVFKVS KTLKDGAIDI VNKWQTVAPA LPGDLMIRIL AMAQQATFEG 300 MYLGTCNNLL PLITSKFPEL GFNRGQCNEM PWAQTIPFIH LGNRDLGDLT NRNNNFKPFA 360 EYKSDYVYQP IPKNVWEQIF GWLTKPGAGI MIMDPYGATI SATPETATPF PHRKGVLFNI 420 QYVNYWFAEG AGAAPLQWSK DMYKFMEPYV SKNPRQAYAN YRDIDLGRNE VVNDVSTYSS 480 GKVWGEKYFK GNFQRLAMIK GKVDPEDYFR NEQSIPPLLT KY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02465 | PLN02465 | 0.002 | 3 | 161 | 159 | + L-galactono-1,4-lactone dehydrogenase | ||
COG0277 | GlcD | 3.0e-10 | 78 | 215 | 139 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 5.0e-15 | 457 | 516 | 60 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 5.0e-22 | 78 | 217 | 141 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABB78007.1 | 0 | 1 | 522 | 1 | 525 | major pollen allergen Phl p 4 precursor [Phleum pratense] |
EMBL | CAD54671.2 | 0 | 18 | 522 | 1 | 508 | pollen allergen Phl p 4 [Phleum pratense] |
EMBL | CAH92627.1 | 0 | 5 | 522 | 3 | 518 | pollen allergen Sec c 4 [Secale cereale] |
EMBL | CAH92633.1 | 0 | 5 | 522 | 3 | 518 | pollen allergen Tri a 4 [Triticum aestivum] |
EMBL | CAH92635.1 | 0 | 4 | 521 | 2 | 518 | pollen allergen Hor v 4 [Hordeum vulgare] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3tsj_B | 0 | 26 | 522 | 1 | 500 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
PDB | 3tsj_A | 0 | 26 | 522 | 1 | 500 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
PDB | 3tsh_A | 0 | 26 | 522 | 1 | 500 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 4dns_B | 0 | 33 | 519 | 10 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 33 | 519 | 10 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |