Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00043706m |
Family | AA7 |
Protein Properties | Length: 475 Molecular Weight: 51115.3 Isoelectric Point: 9.5428 |
Chromosome | Chromosome/Scaffold: 0307482 Start: 2 End: 1485 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA7 | 117 | 474 | 0 |
LRALYYAIANRSARLGFPGGVGPTVGVGGHLSGGGFGLLLRKHGLAADHVVDAVIVDADGRLLNRAAMGEDLFWAIRAGGGGSFGIVLRWKLRLVRLPAT VAVFTVRRARNQSATALLARWQRVAPALPCDVFLRVVLQNQDAQFESLYLGACAGLVAAIAGRFPEHGVAARDCVEMTWIESVLYFAFYGLGKPRELLLD RGAGPERYFKAKSDYVSEPVPSHAWESAWSWLLRDGAGLLILDPYGGRMGGVSPSATPFPHRRELFNLQYYGFWFENGTGVAEKHVGWVRGVHREMEPYV SRNPRGAYVNYRDLDLGVNGDDDDGGEGGYEKARAWGEAYFKANFERLAAVKAKVDPH |
Full Sequence |
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Protein Sequence Length: 475 Download |
HRAASVAPAA PSPDTASFLR CLAVDLPPQV LRTNASPSYT SVLVSSIKNL LFVAPGTPTP 60 VAIVAAADAS HVQAAVRCGA RHGVRVRPRS GGHDYEGLSY RSLSAARPFA VVDLAALRAL 120 YYAIANRSAR LGFPGGVGPT VGVGGHLSGG GFGLLLRKHG LAADHVVDAV IVDADGRLLN 180 RAAMGEDLFW AIRAGGGGSF GIVLRWKLRL VRLPATVAVF TVRRARNQSA TALLARWQRV 240 APALPCDVFL RVVLQNQDAQ FESLYLGACA GLVAAIAGRF PEHGVAARDC VEMTWIESVL 300 YFAFYGLGKP RELLLDRGAG PERYFKAKSD YVSEPVPSHA WESAWSWLLR DGAGLLILDP 360 YGGRMGGVSP SATPFPHRRE LFNLQYYGFW FENGTGVAEK HVGWVRGVHR EMEPYVSRNP 420 RGAYVNYRDL DLGVNGDDDD GGEGGYEKAR AWGEAYFKAN FERLAAVKAK VDPH* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 0.0003 | 176 | 474 | 319 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 5.0e-7 | 423 | 473 | 51 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
Gene Ontology | |
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GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ01286.1 | 0 | 14 | 473 | 34 | 516 | hypothetical protein OsI_23311 [Oryza sativa Indica Group] |
RefSeq | NP_001057827.1 | 0 | 14 | 473 | 34 | 519 | Os06g0548200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001130124.1 | 0 | 14 | 474 | 41 | 520 | hypothetical protein LOC100191218 [Zea mays] |
RefSeq | NP_001143977.1 | 0 | 3 | 473 | 19 | 509 | hypothetical protein LOC100276794 [Zea mays] |
RefSeq | XP_002438539.1 | 0 | 4 | 474 | 5 | 499 | hypothetical protein SORBIDRAFT_10g021670 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 4dns_B | 0 | 18 | 474 | 13 | 484 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 4dns_A | 0 | 18 | 474 | 13 | 484 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_B | 0 | 18 | 473 | 11 | 483 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsj_A | 0 | 18 | 473 | 11 | 483 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
PDB | 3tsh_A | 0 | 18 | 473 | 11 | 483 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
cannabinoid biosynthesis | RXN-7854 | EC-1.21.3 | tetrahydrocannabinolic acid synthase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DT653726 | 245 | 230 | 474 | 0 |
EE183308 | 230 | 245 | 474 | 0 |
DR794835 | 212 | 263 | 474 | 0 |
CD426586 | 210 | 265 | 474 | 0 |
DR973344 | 264 | 199 | 461 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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