| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00000970m |
| Family | GH5 |
| Protein Properties | Length: 585 Molecular Weight: 66030.8 Isoelectric Point: 6.4548 |
| Chromosome | Chromosome/Scaffold: 010677 Start: 6857 End: 11226 |
| Description | |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 272 | 542 | 3.36312e-44 |
| EHRTSFITASDFDFLSRHGINTVRIPVGWWITQDPFPPSPFVGGSLAALDLAFSWAQSYGLKCIIDLHAAPGSQNGMEHSASRDGSVDWPSPEYVSQTLE VIDFLATRYGGHPSLLGIELLNEPSAATVPLDVLVSYYTRGYQIVRNHSTTAYVILCQRIGNADPIELFQAGIGLSNVVVDLHYYNLFDPYFASMNSTQN IEFIYKNRAPQLQALRDTNGPLLFIGEWVNEWDVQNASQYEYQKFGRAQLDVYANATFGWSYWTLKNDRMH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 585 Download |
| MRMLRWFCGL TRRDRVRNEV IRDRVGVAPI EEKLTQHRLR WFGHVQRRPP APVRSGVLER 60 VDNVKRGRVD GLSKVRAVNL GGWLVVEGWI KPSLFDGIPN GDMLVGGLIS VIQFVFLDGT 120 QVQLRSVVLN KYVSAANGGG SNVTVDRDVA STWETFRLWR VSENEFQLRS LGGEFLTSNS 180 EDGLILATAR EPLSTETFYI ERNDESVHIK LLNGGYVQAT NDHLLISTNQ FQPGWDNNLA 240 TFQLVIVANN LHGDYQLANG YGYERAKMVL EEHRTSFITA SDFDFLSRHG INTVRIPVGW 300 WITQDPFPPS PFVGGSLAAL DLAFSWAQSY GLKCIIDLHA APGSQNGMEH SASRDGSVDW 360 PSPEYVSQTL EVIDFLATRY GGHPSLLGIE LLNEPSAATV PLDVLVSYYT RGYQIVRNHS 420 TTAYVILCQR IGNADPIELF QAGIGLSNVV VDLHYYNLFD PYFASMNSTQ NIEFIYKNRA 480 PQLQALRDTN GPLLFIGEWV NEWDVQNASQ YEYQKFGRAQ LDVYANATFG WSYWTLKNDR 540 MHWDFEWNIR NKYLLFSASS LLKTPSFLLL LALGWGTCLT IMPR* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| cd00257 | Fascin | 4.0e-5 | 120 | 224 | 107 | + Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) |
| pfam00150 | Cellulase | 7.0e-17 | 258 | 539 | 286 | + Cellulase (glycosyl hydrolase family 5). |
| COG2730 | BglC | 7.0e-25 | 250 | 558 | 349 | + Endoglucanase [Carbohydrate transport and metabolism] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EAZ07396.1 | 0 | 70 | 572 | 26 | 526 | hypothetical protein OsI_29647 [Oryza sativa Indica Group] |
| RefSeq | NP_001062079.1 | 0 | 70 | 584 | 26 | 532 | Os08g0484100 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002262875.1 | 0 | 69 | 576 | 74 | 570 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002438060.1 | 0 | 69 | 584 | 24 | 539 | hypothetical protein SORBIDRAFT_10g007500 [Sorghum bicolor] |
| RefSeq | XP_002533566.1 | 0 | 68 | 579 | 7 | 509 | conserved hypothetical protein [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1eqp_A | 7e-30 | 254 | 546 | 45 | 370 | A Chain A, Exo-B-(1,3)-Glucanase From Candida Albicans |
| PDB | 3n9k_A | 1e-29 | 254 | 546 | 50 | 375 | A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From Candida Albicans In Complex With Laminaritriose At 1.7 A |
| PDB | 1eqc_A | 1e-29 | 254 | 546 | 45 | 370 | A Chain A, F229aE292S DOUBLE MUTANT OF EXO-Beta-1,3-Glucanase From Candida Albicans In Complex With Laminaritriose At 1.7 A |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CO087274 | 282 | 196 | 475 | 0 |
| JG854517 | 252 | 266 | 516 | 0 |
| EX372101 | 254 | 302 | 554 | 0 |
| DC898905 | 373 | 185 | 554 | 0 |
| GO366415 | 295 | 251 | 537 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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