| APIS family ID | Stp | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN072 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:7791212 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF08133 | |||||||||||||
| Phrog | phrog_6763 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: 165505; End: 165585; Strand: - | |||||||||||||
| Description | Stp has been implicated with activation of the anticodon nuclease and inhibition of EcoprrI restriction. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000866.4 | 162967 | 163602 | - | NP_049873.1 | 211 | 23574.32 | 4.5 | 9.1923 | MotA-like activator of middle period transcription | phrog_1345 | PF09114.13 ;PF09158.13 |
| NC_000866.4 | 163730 | 163879 | - | NP_049874.1 | 49 | 4841.93 | 1.0 | 10.0000 | MotA.1 hypothetical predicted periplasmic protein | ||
| NC_000866.4 | 163876 | 165204 | - | NP_049875.1 | 442 | 50493.59 | 9.5 | 8.9935 | DNA topoisomerase II | phrog_20354 ; phrog_551 ; phrog_28877 | PF00521.23 |
| NC_000866.4 | 165209 | 165349 | - | NP_049876.1 | 46 | 5098.37 | 1.5 | 8.5432 | gp52.1 conserved hypothetical predicted membrane protein | ||
| NC_000866.4 | 165342 | 165497 | - | NP_049877.1 | 51 | 5471.61 | -1.0 | 4.1089 | Ac acridine resistance protein | ||
| NC_000866.4 | 165505 | 165585 | - | NP_049878.1 | 26 | 3183.62 | 4.0 | 10.8827 | activator of host PrrC lysyl-tRNA endonuclease | phrog_6763 ; phrog_6763 | PF08133.14 |
| NC_000866.4 | 165585 | 166040 | - | NP_049879.1 | 151 | 16933.49 | 12.0 | 10.4518 | Ndd-like nucleoid disruption protein | phrog_1102 | PF06591.14 |
| NC_000866.4 | 166101 | 166316 | - | NP_049880.1 | 71 | 8143.06 | -8.0 | 3.9951 | hypothetical protein | ||
| NC_000866.4 | 166325 | 166435 | - | NP_049881.1 | 36 | 4354.14 | 0.0 | 5.5477 | Ndd.2 hypothetical predicted outer membrane protein | ||
| NC_000866.4 | 166432 | 166554 | - | NP_049882.1 | 40 | 4303.21 | 0.5 | 7.0015 | periplasmic protein | ||
| NC_000866.4 | 166548 | 166628 | - | NP_049883.1 | 26 | 3019.62 | 1.5 | 8.0246 | Ndd.3 hypothetical predicted inner membrane protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .