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Seed proteins  | Seed protein 3D structures  |  Structural homologs

Seed protein information help

APIS family ID ardk
Inhibited defense system restriction-modification (RM)
CLAN ID CLAN068
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
AAB36885.1 gene_page: ardk 113 12712.58 10.0042 4.5
Phage property
Phage Genbank id
Plasmid pKM101 U72482.2
PMID/References PMID: 8393008
PDB structures ;
Pfam domains
Phrog
Host taxa plasmids
Gene Location Start: ;  End: ;  Strand: 
Description ArdK and ArdR likely serve as ardKR-dependent regulatory system that controls the expression of ArdA and ArdB.

Predicted 3D structure by alphafold2 with pTM = 0.58 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database