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Seed proteins  | Seed protein 3D structures  |  Structural homologs

Seed protein information help

APIS family ID vcrx090
Inhibited defense system restriction-modification (RM)
CLAN ID CLAN073
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
YP_008997726.1 gene_page: vcrx090 301 33287.28 4.2908 -19.0
Phage property
Phage Genbank id
Vibrio cholerae
PMID/References PMID:32556263
PDB structures ;
Pfam domains
Phrog
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;
Gene Location Start: ;  End: ;  Strand: 
Description vcrx089 and vcrx090 promote resistance against type I restriction-modification.

Predicted 3D structure by alphafold2 with pTM = 0.59 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database