dbCAN-seq: a database of CAZyme sequence and annotation

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chitin

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Chitin is a linear polysaccharide composed of repeating β(1,4)-N-acetyl-D-glucosamine units. As the second most abundant natural polysaccharide, chitin is known as the primary component of fungi cell wall, it also present in marine invertebrates, insects, and can be produced by bacteria.

References

Hofmann, A. (1929). Über den enzymatischen Abbau des Chitins und Chitosans [On the enzymatic degradation of chitin and chitosan] (Thesis). Zurich, Switzerland: University of Zurich.
Matyjaszewski, K., Möller, M., Schmidt, H., & Ueda, M. (2012). Polymer science: a comprehensive reference. Elsevier.

CAZyme Gene Cluster:

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Substrate	Genome_ID	CGC_ID	CGC_Content	PUL_ID	Species Name
chitin	MGYG000001691	MGYG000001691_16\|CGC2	1.B.25.1.13,1.B.52.2.1,null,GH18\|CBM5,GH18\|CBM5,CBM5,GH19\|CBM73\|CBM5	PUL0497	Aeromonas veronii
chitin	MGYG000002529	MGYG000002529_25\|CGC1	2.A.21.9.2,GH18\|CBM5,CBM5,CBM73\|CBM5\|GH19,null,null,CBM73\|GH18\|CBM5,CheW+Response_reg,null,3.A.1.122.15,3.A.1.122.15	PUL0208	Aeromonas veronii
chitin	MGYG000002836	MGYG000002836_8\|CGC1	3.A.1.135.6,3.A.1.135.6,MarR,null,GH94\|GT84,GH94\|GH0\|GT84,null,2.A.50.2.1	PUL0012	Anaerocolumna aminovalerica
chitin	MGYG000000151	MGYG000000151_10\|CGC1	3.A.1.115.1,2.A.23.1.8,3.2.1.14\|CBM5\|GH18,3.2.1.14\|CBM5\|GH18	PUL0269	Clostridium paraputrificum
chitin	MGYG000001548	MGYG000001548_4\|CGC68	3.A.3.7.2,3.A.3.7.2,3.A.3.7.2,CBM5\|CBM12\|3.2.1.-\|GH18,CBM12\|CBM2\|GH18\|3.2.1.14,LacI,GH94,null,3.A.1.1.29,3.A.1.1.10	PUL0269	Paenibacillus
chitin	MGYG000004494	MGYG000004494_10\|CGC1	GH0\|GT84\|GH94,null,3.A.1.137.2,TetR_N,3.A.1.122.14,3.A.1.137.2,HATPase_c,2.A.5.5.2	PUL0012	CAG-269 sp000437215
chitin	MGYG000002493	MGYG000002493_1\|CGC2	3.A.1.122.4,TetR_N,CBM5\|GH18,CBM5\|GH18	PUL0269	Enterococcus
chitin	MGYG000001328	MGYG000001328_4\|CGC3	CBM5\|GH18,3.2.1.14\|CBM5\|GH18,CBM73\|CBM5\|GH18,null,null,9.A.5.1.1	PUL0208	Clostridium tertium
chitin	MGYG000003115	MGYG000003115_5\|CGC1	3.A.1.113.3,null,null,CBM73\|GH18\|CBM5,GH18\|CBM5,3.A.15.1.1,null,null,3.A.15.1.1,3.A.15.1.1,null,3.A.15.1.1,3.A.15.1.1	PUL0269	Franconibacter helveticus

Showing 1 to 9 of 9 entries

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