dbCAN-seq: a database of CAZyme sequence and annotation

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carrageenan

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Water-soluble linear sulfated galactans from red seaweeds. They consist of repeating disaccharide units with alternating 3-linked β−d-galactopyranose and 4-linked α-galactopyranose or 3, 6-anhydro- α-galactopyranose. Between the units are α-1,3 glycosidic bonds. kappa, iota, and lambda carrageenan are three main types based on the number of sulfate groups on the repeating disaccharide units.

References

Li, J., He, Z., Liang, Y., Peng, T. and Hu, Z., 2022. Insights into Algal Polysaccharides: A Review of Their Structure, Depolymerases, and Metabolic Pathways. Journal of Agricultural and Food Chemistry, 70(6), pp .1749-1765. Click here to redirect detail information.
Zia, K. M., Tabasum, S., Nasif, M., Sultan, N., Aslam, N., Noreen, A., & Zuber, M. (2017). A review on synthesis, properties and applications of natural polymer based carrageenan blends and composites. International journal of biological macromolecules, 96, 282–301. Click here to redirect detail information.

CAZyme Gene Cluster:

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Substrate	Genome_ID	CGC_ID	CGC_Content	Species Name
carrageenan	MGYG000001507	MGYG000001507_1\|CGC58	3.A.11.1.1,null,3.A.11.2.1,null,null,2.A.86.1.11,CBM13\|GH16_21\|GH16,CBM13\|GH16_21\|GH16,3.A.1.1.9,8.A.59.2.1,Response_reg,HTH_AraC,GH94,3.A.1.1.41,3.A.1.1.25,SBP_bac_1,CBM54\|GH16\|CBM4\|CBM6\|GH16_3	Paenibacillus ihuae
carrageenan	MGYG000001525	MGYG000001525_20\|CGC32	8.A.5.1.3,3.A.1.1.9,GH16\|GH16_21,GH94,3.A.1.1.41,3.A.1.1.19,3.A.1.1.2,HTH_AraC+HTH_AraC,8.A.59.2.1,GH16\|CBM13\|GH16_21,null,null,3.A.1.201.19,null,MarR,2.A.1.11.6	Paenibacillus_A rubinfantis

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