| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.001G200400.6 |
| Family | GH35 |
| Protein Properties | Length: 593 Molecular Weight: 64778.2 Isoelectric Point: 7.5451 |
| Chromosome | Chromosome/Scaffold: 01 Start: 19556414 End: 19561616 |
| Description | beta galactosidase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH35 | 1 | 89 | 5.3e-38 |
| MWTEAWTGWFTQFGGPVPHRPAEDMAFSVARFIQKGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGLLRQPKWGHLKDLHR | |||
| Full Sequence |
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| Protein Sequence Length: 593 Download |
| MWTEAWTGWF TQFGGPVPHR PAEDMAFSVA RFIQKGGSFI NYYMYHGGTN FGRTAGGPFI 60 ATSYDYDAPL DEYGLLRQPK WGHLKDLHRA IKLCEPALVS GDATVIPLGN YQEAHVFNYK 120 AGGCAAFLAN YHQRSFAKVS FRNMHYNLPP WSISILPDCK NTVYNTARVG AQSATIKMTP 180 VPMHGGLSWQ TYNEEPSSSG DNTFTMVGLL EQINTTRDVS DYLWYMTDVH IDPSEGFLKS 240 GKYPVLTVLS AGHALHVFIN GQLSGTAYGS LDFPKLTFSQ GVSLRAGVNK ISLLSIAVGL 300 PNVGPHFETW NAGILGPVTL NGLNEGRMDL SWQKWSYKIG LHGEALSLHS ISGSSSVEWA 360 EGSLVAQKQP LSWYKTTFNA PAGNSPLALD MGSMGKGQIW INGQHVGRHW PAYKASGTCG 420 ECTYIGTYNE NKCSTNCGEA SQRWYHVPQS WLKPTGNLLV VFEEWGGDPN GVSLVRREVD 480 SVCADIYEWQ PTLMNYQMQA SGKVNKPLRP KAHLSCGPGQ KIRSIKFASF GTPEGVCGSY 540 NQGSCHAFHS YDAFNNLCVG QNSCSVTVAP EMFGGDPCPS VMKKLAAEAI CS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02140 | Gal_Lectin | 5.0e-21 | 514 | 591 | 82 | + Galactose binding lectin domain. | ||
| pfam01301 | Glyco_hydro_35 | 4.0e-44 | 1 | 91 | 94 | + Glycosyl hydrolases family 35. | ||
| PLN03059 | PLN03059 | 0 | 1 | 592 | 593 | + beta-galactosidase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK96254.1 | 0 | 1 | 592 | 255 | 846 | unknown [Populus trichocarpa x Populus deltoides] |
| EMBL | CAC44500.1 | 0 | 1 | 592 | 252 | 843 | beta-galactosidase [Fragaria x ananassa] |
| RefSeq | XP_002327432.1 | 0 | 1 | 592 | 248 | 839 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329051.1 | 0 | 1 | 592 | 239 | 830 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527409.1 | 0 | 1 | 592 | 254 | 845 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 0.000000005 | 1 | 87 | 236 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.002 | 240 | 410 | 394 | 546 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.00000001 | 1 | 74 | 235 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_B | 0.0007 | 222 | 477 | 385 | 584 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 4e8d_A | 0.00000001 | 1 | 74 | 235 | 313 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO780602 | 486 | 1 | 477 | 0 |
| HO778160 | 481 | 1 | 479 | 0 |
| HO795552 | 394 | 1 | 393 | 0 |
| GW868956 | 316 | 173 | 488 | 0 |
| CK278165 | 298 | 45 | 342 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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