| Basic Information | |
|---|---|
| Species | Citrus clementina |
| Cazyme ID | Ciclev10000160m |
| Family | GH2 |
| Protein Properties | Length: 978 Molecular Weight: 110864 Isoelectric Point: 6.6673 |
| Chromosome | Chromosome/Scaffold: 5 Start: 32939571 End: 32945214 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GH2 | 42 | 756 | 0 |
| AKPWMEAVVPGTVLATLVKNKAVPDPFYGLENEMILDIADSGREYYTFWFFTTFQCKLSENQHLDLNFRAINYSAEVYLNGQKRVLQKGMFRRHSLDVTD ILHPDGQNLLAVLVHPPDHPGTIPPEGGQGGDHEIGKDVATQYVEGWDWIAPIRDRNTGIWDEVSISVTGPVKIIDPHLVSSFFDNYTRVYLHASTELEN RSTWVAECSLSIQVTTDLEGGVCLVEHLQTQHLSISPGAHVQYTFPQLFFYKPNLWWPNGMGKQSLYTVRISVDVKGYGESDLWSHLFGFRKIESHIDNA TGGRLFKVNGQPIFIRGGNWILSDGLLRLSKKRYKTDIKFHADMNMNMIRCWGGGLAERPEFYHYCDIYGLLVWQEFWITGDVDGRGVPVSNPDGPLDHD LFMLCARDTVKLLRNHPSLALWVGGNEQVPPEDINKALKNDLKLHPYFKNSNETGNFTEDLSLSVQDPSQYLDGTRIYIQGSLWDGFADGKGNFTDGPYE IQYPEDFFKDSFYQYGFNPEVGSVGMPVAATIRATMPPEGWQIPVFKQGSDGYIEEVPNPIWKYHKYIPYSKPGKVHDQILLYGIPKDLDDFCLKAQLVN YIQYRALLEGWSSRMWSKYTGVLIWKNQNPWTGLRGQFYDHLLDQTAGFYGCRCAAEPIHVQLNLASYFIEVVNTTSQELSDVAIEASVWDLDGACPYYK VTEKLSVPPKKVVSI | |||
| Full Sequence |
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| Protein Sequence Length: 978 Download |
| MGMLSASIGK TKLDSGWLAA RSTEVGLSGT QLTTSHPPTG PAKPWMEAVV PGTVLATLVK 60 NKAVPDPFYG LENEMILDIA DSGREYYTFW FFTTFQCKLS ENQHLDLNFR AINYSAEVYL 120 NGQKRVLQKG MFRRHSLDVT DILHPDGQNL LAVLVHPPDH PGTIPPEGGQ GGDHEIGKDV 180 ATQYVEGWDW IAPIRDRNTG IWDEVSISVT GPVKIIDPHL VSSFFDNYTR VYLHASTELE 240 NRSTWVAECS LSIQVTTDLE GGVCLVEHLQ TQHLSISPGA HVQYTFPQLF FYKPNLWWPN 300 GMGKQSLYTV RISVDVKGYG ESDLWSHLFG FRKIESHIDN ATGGRLFKVN GQPIFIRGGN 360 WILSDGLLRL SKKRYKTDIK FHADMNMNMI RCWGGGLAER PEFYHYCDIY GLLVWQEFWI 420 TGDVDGRGVP VSNPDGPLDH DLFMLCARDT VKLLRNHPSL ALWVGGNEQV PPEDINKALK 480 NDLKLHPYFK NSNETGNFTE DLSLSVQDPS QYLDGTRIYI QGSLWDGFAD GKGNFTDGPY 540 EIQYPEDFFK DSFYQYGFNP EVGSVGMPVA ATIRATMPPE GWQIPVFKQG SDGYIEEVPN 600 PIWKYHKYIP YSKPGKVHDQ ILLYGIPKDL DDFCLKAQLV NYIQYRALLE GWSSRMWSKY 660 TGVLIWKNQN PWTGLRGQFY DHLLDQTAGF YGCRCAAEPI HVQLNLASYF IEVVNTTSQE 720 LSDVAIEASV WDLDGACPYY KVTEKLSVPP KKVVSIAEMK YPKTKNPKPV YFLLLKLYNM 780 SDYGIISRNF YWLHLPGGDY KLLEPYRKKN IPLKLTSQIF IKGSTYEVEM QVHNRSKKQD 840 PKRLTYKNNF TTVPVDGDFN MASTEPVNSA TEEKQEAGLF RRICRHFKKD TDSLKVAELN 900 GTDSGVAFFL HFSVRGWSKS HKEGEDTRIL PVHYSDNYFS LAPGEVMPIK ISFEVPHGVT 960 PKVTLHGWNY HVGQTIL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02837 | Glyco_hydro_2_N | 2.0e-7 | 88 | 165 | 79 | + Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. | ||
| PRK10150 | PRK10150 | 2.0e-9 | 63 | 468 | 439 | + beta-D-glucuronidase; Provisional | ||
| pfam00703 | Glyco_hydro_2 | 2.0e-10 | 213 | 332 | 120 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| PRK10340 | ebgA | 5.0e-14 | 102 | 468 | 382 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| COG3250 | LacZ | 1.0e-37 | 47 | 481 | 441 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAO27794.1 | 0 | 6 | 977 | 2 | 976 | glycosyl hydrolase [Gossypium hirsutum] |
| EMBL | CAN82620.1 | 0 | 6 | 976 | 2 | 972 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002284576.1 | 0 | 6 | 976 | 2 | 972 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319539.1 | 0 | 6 | 976 | 2 | 972 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 6 | 977 | 2 | 973 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 38 | 793 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 38 | 793 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 38 | 793 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY284833 | 304 | 1 | 304 | 0 |
| ES793920 | 368 | 376 | 741 | 0 |
| FC918235 | 297 | 1 | 297 | 0 |
| EY703266 | 301 | 610 | 910 | 0 |
| DY284833 | 21 | 301 | 321 | 0.82 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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