Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10014395m |
Family | CBM57 |
Protein Properties | Length: 740 Molecular Weight: 82265.3 Isoelectric Point: 8.4672 |
Chromosome | Chromosome/Scaffold: 2 Start: 26050436 End: 26055543 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 135 | 302 | 7.6e-31 |
LHINCGGAKINTGHTKYEADMEARGASMFYSSGQYWAFSSTGKFMDDDTDLDNYIRTNTSTLSKVSAVDLELYRTARVSPLSLTYYGLCLGNGNYTVRLH FAEIIFKNDSTFNSLGKRIFDIYIQEKLVKKDFNIEDEAGGTGIPIVKNFPAEVTSHTLKIHLYWAGR |
Full Sequence |
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Protein Sequence Length: 740 Download |
MNLKTLILTK CLIHGEIPDY IGDMTKLKNI DLSFNNLTGG IPTTFEKLAK TNFMYLTGNK 60 LTGPVPKYIF NSNKNVDISL NNFTWESSDP IECPRGSVNL VESYSSPRNK LDKVHPCLRQ 120 NFPCSAPADQ YHYTLHINCG GAKINTGHTK YEADMEARGA SMFYSSGQYW AFSSTGKFMD 180 DDTDLDNYIR TNTSTLSKVS AVDLELYRTA RVSPLSLTYY GLCLGNGNYT VRLHFAEIIF 240 KNDSTFNSLG KRIFDIYIQE KLVKKDFNIE DEAGGTGIPI VKNFPAEVTS HTLKIHLYWA 300 GRGTTGIPLR GTYGPLISAI SVKSNFKPPV VHSKKNHVMI MAAIVGASVL LVLLILFIMR 360 WKGCLGGKVS ADKELRGLDL QTGLYTLRQI KAATNNFDPA NKVGEGGFGS VYKGILSDGT 420 VIAVKQLSSK SRQGNREFVN EIGMISAQQH PNLVKLYGCC VEGNQLLLVY EYMKNNCLSR 480 AIFGKDTEYR LKLDWPTRKK ICIGIARGLA YLHEDSRIKI VHRDIKTSNV LLDKDLNAKI 540 SDFGLAKLYE EDKTHISTRI AGTIGYMAPE YAMRGYLTSK ADVYSFGVVT LEIVSGKSNT 600 NYRPNEDFVY LLDWAYVLQE RGNLLELVDT SLGSEYSSEE AMAMLNVALL CTNASPTLRP 660 TMSQVVSMLE GRTVVQDLLA DPGFLAVNSK LKAVRSHFWQ RQSQTLSISS YDPITDCSNS 720 SIKTGDCVLL RESLVQHDE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07714 | Pkinase_Tyr | 3.0e-52 | 402 | 669 | 281 | + Protein tyrosine kinase. | ||
smart00221 | STYKc | 2.0e-54 | 402 | 669 | 277 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
smart00219 | TyrKc | 1.0e-55 | 402 | 669 | 275 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
cd00192 | PTKc | 3.0e-56 | 401 | 670 | 285 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. | ||
pfam11721 | Malectin | 7.0e-58 | 133 | 320 | 192 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0004672 | protein kinase activity |
GO:0006468 | protein phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002278131.1 | 0 | 2 | 720 | 275 | 991 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002532988.1 | 0 | 2 | 738 | 192 | 926 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ulz_A | 0 | 381 | 671 | 16 | 308 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3uim_A | 0 | 381 | 671 | 16 | 308 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
PDB | 3tl8_H | 0 | 381 | 671 | 24 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_G | 0 | 381 | 671 | 24 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_D | 0 | 381 | 671 | 24 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |