| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.019G004600.1 |
| Family | CBM57 |
| Protein Properties | Length: 662 Molecular Weight: 74751 Isoelectric Point: 9.927 |
| Chromosome | Chromosome/Scaffold: 19 Start: 471663 End: 477785 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 273 | 444 | 9.9e-29 |
| HINCGGSETTVGNTMYEADDEPGGATKYVPKREVWQISTTGHVWDVKPSEDDYIAQNMSILRMNNSQLYTKARLTPLSLTYHVRCLVNGNYSVKLHFAEI VMRDNRSFYSLGRRIFDVYIQDRIVLKDFDIEKAAQGVDKVYIHNSTAKVTDRALEIRLHWAGKGTTTSPKI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 662 Download |
| MMVLSYKVKT LESYRFLKGQ DLAGSLPKSI VKLPYLTNLD LWANYLSGNI PPEWANTKLE 60 ILSIAVNRLT GPIPSYLGKI ITLRCLNIQN NMFSGIVPPE LGNLVNLENI NLSANNFTGE 120 LPLALSNLTK LKELRLSSNN FIGRIPDFIQ SWKQLDILEI QAGGFSGPIP LSISLLNSLT 180 QLRISNLLGD GSEFQNLESM QNMTYLMLSN CNLSGSFPRY LTEMKQLKVF YVTRNMLSGP 240 IPPWIQSRNT RYEFDLSYNN FTEIPTNYQY WVHINCGGSE TTVGNTMYEA DDEPGGATKY 300 VPKREVWQIS TTGHVWDVKP SEDDYIAQNM SILRMNNSQL YTKARLTPLS LTYHVRCLVN 360 GNYSVKLHFA EIVMRDNRSF YSLGRRIFDV YIQDRIVLKD FDIEKAAQGV DKVYIHNSTA 420 KVTDRALEIR LHWAGKGTTT SPKIGIYGPL ISAIDIEPEF KPPTKGKRKK LIVAGSVVLL 480 LFLIFILLSV LWWKGYLGGR KSRDQERSTT RLMEALSGMY EKPSANNKIH LMKKLFNLKM 540 TEGISVTQHL NNFNTITNQL SSVEIEFDDE IRALILLASL PSSWEGMRTA VSNSAGKSKL 600 KYDDIRDLIL AEEVRRKDSG ENSSSGSALN INTQGRRQDR GLSRGRSKSR CRSKSKFGPR 660 K* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 2.0e-24 | 17 | 262 | 249 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 8.0e-29 | 22 | 265 | 246 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-29 | 5 | 265 | 265 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam14227 | UBN2_2 | 2.0e-33 | 506 | 625 | 120 | + gag-polypeptide of LTR copia-type. This family is found in Plants and fungi, and contains LTR-polyproteins, or retrotransposons of the copia-type. | ||
| pfam11721 | Malectin | 3.0e-49 | 272 | 454 | 187 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002300205.1 | 0 | 16 | 535 | 61 | 632 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002300205.1 | 0.000000001 | 102 | 247 | 52 | 196 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329475.1 | 0 | 16 | 505 | 91 | 575 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002332887.1 | 0 | 40 | 527 | 1 | 544 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 2e-19 | 17 | 289 | 227 | 557 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3rj0_A | 4e-17 | 22 | 270 | 427 | 723 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3rj0_A | 6e-16 | 16 | 262 | 397 | 666 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3rj0_A | 0.0000000000002 | 31 | 262 | 145 | 378 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
| PDB | 3rj0_A | 0.0000000001 | 8 | 230 | 462 | 726 | A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex With Mn And Udp-2f-Galactose |
