Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.006G014100.2 |
Family | CBM57 |
Protein Properties | Length: 240 Molecular Weight: 27154.3 Isoelectric Point: 9.3018 |
Chromosome | Chromosome/Scaffold: 06 Start: 951693 End: 954535 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 15 | 175 | 5.6e-21 |
INCGGEELNVGKDHYHNDTSTSSFNLSPSDDWAYSFSGDYLWATVNASTLVRNSTCKDCTPETKIDNDFRLAPVSLMYYGLCLHKGKYIVTLHFSETLYS KGEDHSITGKRVFDVYIQGRLVKKDLNIKEIPELQNEVRKLKFPAKINEGSLEIKLFWAGK |
Full Sequence |
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Protein Sequence Length: 240 Download |
MKTEKCYRKH NSLFINCGGE ELNVGKDHYH NDTSTSSFNL SPSDDWAYSF SGDYLWATVN 60 ASTLVRNSTC KDCTPETKID NDFRLAPVSL MYYGLCLHKG KYIVTLHFSE TLYSKGEDHS 120 ITGKRVFDVY IQGRLVKKDL NIKEIPELQN EVRKLKFPAK INEGSLEIKL FWAGKGSLYN 180 PPGINGPLIE AISVTRVSRK LHRWEIALIT IGCLLFLMLL LAFSLRMGWI GGRKLRSGH* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam11721 | Malectin | 1.0e-30 | 12 | 192 | 185 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002307889.1 | 0 | 3 | 217 | 14 | 228 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002307891.1 | 0 | 10 | 199 | 29 | 218 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002322519.1 | 0 | 8 | 196 | 7 | 195 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323341.1 | 0 | 3 | 236 | 290 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323479.1 | 0 | 1 | 236 | 306 | 535 | predicted protein [Populus trichocarpa] |