| Basic Information | |
|---|---|
| Species | Panicum virgatum |
| Cazyme ID | Pavirv00034171m |
| Family | CBM57 |
| Protein Properties | Length: 617 Molecular Weight: 68630.2 Isoelectric Point: 6.7063 |
| Chromosome | Chromosome/Scaffold: 026881 Start: 1919 End: 6979 |
| Description | Leucine-rich repeat transmembrane protein kinase |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 376 | 540 | 2.1e-29 |
| INCGGKSVSVNGNTYEDDSSQIGTSTFILSDDKKWAYSSTGDFVGNENGDYIARNTSKLTLAYPELYTEARLSPLSLKYYGLCMENAEYMVKLHFAEIVF TDDHTYSSNGKRVFDVFIQGSKVLEDFNIEDEAGGPHREITRIFTTNITDNTLEIHFYWGGKGTT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 617 Download |
| EALKGIATKL NKTDWDFSVD PCSASGNWAN STGFIISNVT CDCSFKNNTE CHIIRLELMR 60 QNLSGVLPDE VVNLTYLRYL DLSRNFIQGP IPASWGDLPV YNLSLQGNRI SGTLPKELGR 120 MPMLKSIQLE GNQIEGPIPP ELGNISTLQR FFISANIITG ELPSTFSRLT NMTDFRIDGN 180 SISGKIPSFI KNWQSVNRID MQGTSMSGPI PPEISLLKNL TELRVTDLSG PNMKFPPLQN 240 ALHLTEVVLR NCSIYGEIPY YLGQMLYLKV LDISFNKLTG QVPVNFGGMV ALQYLYLTEN 300 ILTGDFPSWM LKNKASNKVN MDISYNNFTG NPPSECQQVN LNMVSSFSSS NDNSLQPCLR 360 KRLPCTTRPR YSSLFINCGG KSVSVNGNTY EDDSSQIGTS TFILSDDKKW AYSSTGDFVG 420 NENGDYIARN TSKLTLAYPE LYTEARLSPL SLKYYGLCME NAEYMVKLHF AEIVFTDDHT 480 YSSNGKRVFD VFIQGSKVLE DFNIEDEAGG PHREITRIFT TNITDNTLEI HFYWGGKGTT 540 AIPYRGVYGP LISAISVTQT GRNHHELPTG VVIAIVIGAA SFAITLLLIA FYFKVFSRKN 600 TKGNEYIRDI SILGRL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 1.0e-19 | 55 | 226 | 173 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 2.0e-26 | 56 | 334 | 288 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 1.0e-31 | 56 | 334 | 288 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| PLN00113 | PLN00113 | 3.0e-40 | 13 | 333 | 338 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 4.0e-53 | 373 | 555 | 186 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF70100.1 | 0 | 2 | 558 | 11 | 563 | protein kinase, putative [Musa balbisiana] |
| GenBank | ABF72026.1 | 0 | 2 | 558 | 11 | 564 | leucine-rich repeat-containing protein kinase family protein [Musa acuminata] |
| GenBank | EEC72788.1 | 0 | 1 | 604 | 46 | 661 | hypothetical protein OsI_06468 [Oryza sativa Indica Group] |
| GenBank | EEE56614.1 | 0 | 1 | 604 | 46 | 661 | hypothetical protein OsJ_05994 [Oryza sativa Japonica Group] |
| RefSeq | NP_001046374.1 | 0 | 1 | 565 | 46 | 623 | Os02g0232500 [Oryza sativa (japonica cultivar-group)] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 2e-22 | 3 | 335 | 177 | 530 | A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein From Momordica Balsamina With 6-Aminopurine At 2.0a Resolution |
| PDB | 3rj0_A | 3e-18 | 56 | 284 | 345 | 553 | A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein From Momordica Balsamina With 6-Aminopurine At 2.0a Resolution |
| PDB | 3rj0_A | 4e-18 | 56 | 337 | 444 | 722 | A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein From Momordica Balsamina With 6-Aminopurine At 2.0a Resolution |
| PDB | 3rj0_A | 6e-18 | 48 | 353 | 362 | 712 | A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein From Momordica Balsamina With 6-Aminopurine At 2.0a Resolution |
| PDB | 3rj0_A | 0.000000000000006 | 72 | 345 | 145 | 493 | A Chain A, Crystal Structure Of Type I Ribosome Inactivating Protein From Momordica Balsamina With 6-Aminopurine At 2.0a Resolution |
