Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.019G005700.1 |
Family | CBM57 |
Protein Properties | Length: 979 Molecular Weight: 108271 Isoelectric Point: 7.7237 |
Chromosome | Chromosome/Scaffold: 19 Start: 656086 End: 664231 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 379 | 561 | 3.9e-30 |
VHINCGGPEATIGNTIYEADNEPGGAAKYASKREDWQTSTTGHIWDVPASLDSYIAQNKSMLRMDNSVLYTNARLTPLSLTYHVPCLVNGNYTIKLHFAE IVMRDNRSYYSLGRRIFDVYIQDIVVLKDFDIVKEAGGVDKVYIHNYTAPVTNGALEIRLHWAGKGTTTSPKKGIYGPLISAI |
Full Sequence |
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Protein Sequence Length: 979 Download |
MATALSDILR VTSSLLMLML VMFCMGAINL EAQGGSLAPD EVEALLEVAT QLGKKGWNRN 60 MKLCNDTILP PKPDADNKVV CNCSFPGGVC RVIAIYLKRQ DLDGSLPKAI EKLPQLKHLD 120 LWANYLSGNI PSEWANTKLE ILSIGVNNLT GKIPSSLGTI TTLRSLNVQN NMFSGTVPPE 180 LGGLVNLENL TLSANYLTGE LPQALTNLTG LKELRLSSNN FTGRIPDFIQ SWKQLDILEI 240 QAGGFTGPIP LTISLLTNLT DLLFSNCNLS GKFPIYLTRM ARLKILDLSF NRLNGSLPTN 300 YDGLQSLEKM YLTRNMLTGS IPDWIVKRDT RYEIDLSYNN FTSEAKCRET LNLFKSTWGG 360 NYSKPVECLS ACSEERYSVH INCGGPEATI GNTIYEADNE PGGAAKYASK REDWQTSTTG 420 HIWDVPASLD SYIAQNKSML RMDNSVLYTN ARLTPLSLTY HVPCLVNGNY TIKLHFAEIV 480 MRDNRSYYSL GRRIFDVYIQ DIVVLKDFDI VKEAGGVDKV YIHNYTAPVT NGALEIRLHW 540 AGKGTTTSPK KGIYGPLISA IDVESDFKPP DKGRRKRFIV AGAVVLPLFL ILTLLSTLWW 600 KGYLGGRKSR DRELVGLDLL TGIFTFRQIK AATNDFDPAN KLGEGGFGCV YKGVLSDGTQ 660 IAVKQLSAKS KQGNREFVNE IGMISALQHP NLVRLYGCCI EGKQLLLVYE YMENNSLAHV 720 LFGTKEIKAT KLDWRTRQRI CVSIAKGLVF LHEESALKIV HRDIKGTNIL LDKDMNAKIS 780 DFGMAKLDDE DNTHIDTRVA GTMGYMAPEY ALYGYLTYKA DVYSFGVVAL EIVSGTNNVK 840 FRRDENFVCL LDRVLYLQKN GDIMEMVDPR LGSEFNKKEV VRMINVALLC TNQSPALRPT 900 MSTVVSMLEG KTDVEELVMV PSTLGDPSGF STALHNKFAQ SSVNGSLSET QSLVKSSEGP 960 WTASSSSSVQ DLYPISKS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
smart00219 | TyrKc | 3.0e-50 | 641 | 908 | 284 | + Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily. | ||
smart00221 | STYKc | 2.0e-50 | 641 | 908 | 283 | + Protein kinase; unclassified specificity. Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. | ||
cd00180 | PKc | 3.0e-51 | 642 | 832 | 195 | + Catalytic domain of Protein Kinases. Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. | ||
cd00192 | PTKc | 4.0e-53 | 640 | 909 | 284 | + Catalytic domain of Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. | ||
pfam11721 | Malectin | 2.0e-55 | 377 | 561 | 189 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0004672 | protein kinase activity |
GO:0005515 | protein binding |
GO:0005524 | ATP binding |
GO:0006468 | protein phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002300205.1 | 0 | 42 | 973 | 1 | 960 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331887.1 | 0 | 1 | 978 | 1 | 989 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332887.1 | 0 | 120 | 973 | 1 | 880 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522279.1 | 0 | 6 | 975 | 4 | 982 | ATP binding protein, putative [Ricinus communis] |
RefSeq | XP_002528777.1 | 0 | 27 | 972 | 27 | 975 | ATP binding protein, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ulz_A | 0 | 624 | 910 | 20 | 308 | A Chain A, Crystal Structure Of Restriction Endonuclease Bglii Complexed With Dna 16-Mer |
PDB | 3uim_A | 0 | 624 | 910 | 20 | 308 | A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation |
PDB | 3tl8_H | 0 | 624 | 910 | 28 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_G | 0 | 624 | 910 | 28 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3tl8_D | 0 | 624 | 910 | 28 | 316 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |