Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10018058m |
Family | GH3 |
Protein Properties | Length: 770 Molecular Weight: 84577.2 Isoelectric Point: 5.8595 |
Chromosome | Chromosome/Scaffold: 2 Start: 34953134 End: 34955870 |
Description | beta-xylosidase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 60 | 322 | 0 |
GVPRLGLPLYEWWSEALHGVSYIGRRTNTPPGTHFDSEVPGATSFPTVILTTASFNESLWKKIGQTVSTEARAMHNLGNAGLTFWSPNINVVRDPRWGRV METPGEDPFVVGRYSVNYVRGLQDVEGQENTADLSTRPLKVSACCKHYAAYDLDNWKGVDRFHFDSKVTEQDMIETFNLPFEMCVREGDASSVMCSYNRV NGIPTCADSKLLNQTIRGDWNLHGYIVSDCDSIQTIVESHKFLNDTKEEAVARVLKAGLDLDC |
Full Sequence |
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Protein Sequence Length: 770 Download |
PDNKTFTYVC DPARFAELKL KLSDFTFCDA KLPYPVRAKD LVDRMTLAEK VQQLGDLAYG 60 VPRLGLPLYE WWSEALHGVS YIGRRTNTPP GTHFDSEVPG ATSFPTVILT TASFNESLWK 120 KIGQTVSTEA RAMHNLGNAG LTFWSPNINV VRDPRWGRVM ETPGEDPFVV GRYSVNYVRG 180 LQDVEGQENT ADLSTRPLKV SACCKHYAAY DLDNWKGVDR FHFDSKVTEQ DMIETFNLPF 240 EMCVREGDAS SVMCSYNRVN GIPTCADSKL LNQTIRGDWN LHGYIVSDCD SIQTIVESHK 300 FLNDTKEEAV ARVLKAGLDL DCGDYYTNFT VGAVQQGKVR ETDIDRSLRF LYVVLMRLGY 360 FDGSPQYKSL GKNDICNPQH IELAAEAAAQ GIVLLKNDNG TLPFHNATIK TLAVVGPHAN 420 ATKAMIGNYE GIPCRYISPM TGLSTYGNVN YAVGCADIAC KNDSMISQAT DAAKNADATI 480 IVTGLDLSIE AEALDRNDLY LPGFQTQLIN QVADAAKGPV ILVLMCAGGV DISFAKNNPK 540 IKSILWAGYP GEEGGRAIAD IVFGKYNPGG KLPLTWYEGN YVDKIPFTSM PLRPVDKLPG 600 RTYKFFDGPV VYPFGYGLSY TQFKYNLAFS NKSIDVKLDK FQVCRDLNYT NGATKPQCPA 660 VQTADLKCND NYFTFEIEVQ NVGKVDGSEV VMVYSKLPGI AGTPIKQLIG FQRVYVAAGQ 720 SAKVNFTLNV CDSLRNIDFA ANSILAAGAH TILLGDGAVS FPLQVNLIY* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 1.0e-53 | 49 | 420 | 380 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 3.0e-57 | 46 | 349 | 334 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-61 | 392 | 621 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 4.0e-81 | 102 | 735 | 685 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 23 | 756 | 749 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002274591.1 | 0 | 4 | 769 | 43 | 804 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274619.1 | 0 | 6 | 766 | 46 | 802 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002274651.1 | 0 | 1 | 768 | 44 | 808 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002309869.1 | 0 | 40 | 767 | 2 | 693 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519718.1 | 0 | 1 | 766 | 42 | 800 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 102 | 732 | 91 | 700 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u48_A | 0 | 102 | 732 | 91 | 700 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u4a_B | 0 | 102 | 732 | 91 | 700 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3u4a_A | 0 | 102 | 732 | 91 | 700 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 2x41_A | 8.96831e-44 | 61 | 764 | 46 | 708 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY932965 | 321 | 24 | 344 | 0 |
BX838810 | 330 | 7 | 336 | 0 |
GW867030 | 323 | 41 | 363 | 0 |
BX837031 | 335 | 7 | 341 | 0 |
DY913727 | 309 | 58 | 366 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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