| Basic Information | |
|---|---|
| Species | Vitis vinifera |
| Cazyme ID | GSVIVT01021096001 |
| Family | CBM57 |
| Protein Properties | Length: 625 Molecular Weight: 67818.9 Isoelectric Point: 7.296 |
| Chromosome | Chromosome/Scaffold: 10 Start: 1419186 End: 1428789 |
| Description | receptor like protein 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 197 | 359 | 1.4e-26 |
| RVSCGAKQSKFGVDYSGNHWGGDRFWNSLPTFGQNSDHPLSVETSIKQASKSPNFYPEGLYQSALVSTDNQPDLEYTLDVDPNRNYSIWLHFAEIDQSVT GVGQRVFDILINGHIAFKDVDIVKMSGDLYSALVLNTTVAVDGRTLTITMHPTKGNHAIVSAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 625 Download |
| MFAHLLLLLL SFSSAFSPTS GHAPYAMRIS CGARENVHTA PTNTLWYKDF AYTGGIPANA 60 TTPSFISPPL KTLRYFPLSE GPENCYIINR VPKGHYSVRV FFGLVNESSF DSEPLFDVSV 120 EGTQIYSLSS GWSNSDNEQV FAEALVFLTD GSVSLCFHST GHGDPAILSI EILQVDDKAY 180 NFGPQLGQGI ILRTARRVSC GAKQSKFGVD YSGNHWGGDR FWNSLPTFGQ NSDHPLSVET 240 SIKQASKSPN FYPEGLYQSA LVSTDNQPDL EYTLDVDPNR NYSIWLHFAE IDQSVTGVGQ 300 RVFDILINGH IAFKDVDIVK MSGDLYSALV LNTTVAVDGR TLTITMHPTK GNHAIVSAIE 360 VFEILLAESK TLLNEVRALQ KLKSGLGLPL RFGWNGDPCV PQQHPWSGAD CLFDSSSRKW 420 VIDGLGLDNQ GLRGFLPNDI SQLRHLQSIN LSGNRIHGVI PPSLGSIAGL EILDLSYNSF 480 NGSIPESLGL LTSLRKLSLN GNSLSGRVPS ALGGRLLHRA SFNFTDNAGL CGIPGLRTCG 540 PHLSVGAKIG IALGGCVALL VLVICSICWC KRRENILRAQ RISAAREAPY AKARTHFARD 600 VQMGRFHGHD NARTAAENGP SLLS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11721 | Malectin | 0.0003 | 25 | 170 | 162 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| PLN00113 | PLN00113 | 5.0e-11 | 349 | 513 | 195 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 1.0e-16 | 197 | 359 | 175 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 2.0e-70 | 29 | 364 | 351 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 0 | 23 | 624 | 604 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABH07898.1 | 0 | 27 | 624 | 1 | 599 | leucine-rich repeat family protein [Solanum lycopersicum] |
| EMBL | CBI30598.1 | 0 | 1 | 624 | 1 | 624 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002279791.1 | 0 | 27 | 624 | 1 | 600 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305781.1 | 0 | 27 | 624 | 1 | 596 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509445.1 | 0 | 6 | 624 | 12 | 629 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rgz_A | 0.0000000000001 | 397 | 541 | 611 | 750 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3rgz_A | 0.000000001 | 421 | 512 | 467 | 558 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3rgz_A | 0.000000008 | 419 | 512 | 393 | 486 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3rgz_A | 0.000006 | 432 | 513 | 454 | 535 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3rgz_A | 0.0009 | 425 | 508 | 274 | 384 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
