| Basic Information | |
|---|---|
| Species | Gossypium raimondii |
| Cazyme ID | Gorai.011G029600.2 |
| Family | CBM57 |
| Protein Properties | Length: 624 Molecular Weight: 68238.4 Isoelectric Point: 7.0039 |
| Chromosome | Chromosome/Scaffold: 11 Start: 2174274 End: 2179469 |
| Description | receptor like protein 4 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 210 | 359 | 1.9e-26 |
| DYSGDHWGGDRYWEPIRTFGQNADEPRSTENSIKQASDAPNFYPEALYQSAVVSTDSQPDLAYTIDVDPNKNYSIWLHFAEIDALVTDAGQRVFDVLLNG DTIFKEIDILKMSGDRYTALVLNTTVAVSGRTLTITLHPKEGHRAIINAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 624 Download |
| MLRFTLLWLL VFFLSLVSSS ARPAPFAMRI SCGARQNVRT APTYALWYKD FGYTGGIPAN 60 ATTPSFITPP LKTLRYFPLS EGPENCYGIN RVPKGHYTLR IFFGLIKQPD FDDEPLFEIS 120 VEGTLIHSLK SGWTSHDDQV FAEALVFLLD GTVSICFHST GHGDPAIISI EILQVDDKAY 180 YSGPEWGKGV ILKTTSRLTC GTSKPRFDED YSGDHWGGDR YWEPIRTFGQ NADEPRSTEN 240 SIKQASDAPN FYPEALYQSA VVSTDSQPDL AYTIDVDPNK NYSIWLHFAE IDALVTDAGQ 300 RVFDVLLNGD TIFKEIDILK MSGDRYTALV LNTTVAVSGR TLTITLHPKE GHRAIINAIE 360 IFQVIAAESK TSSAEVRALQ ALKRSLGLPN RFAWNGDPCV PKEHPWSGAD CQFDKSGSKW 420 FIDGLDLANQ GLKGFLPDDI SKLIHLQSLN LSGNTIHGVI PSSLGTITSL ELLDLSYNFL 480 NGSIPESLGN LTALRRLNLN GNSLSGRVPG ALGGRLLNGA SFNFTDNAGL CGIPGLPTCG 540 PHLSAGAKVG IAFGVSLSFL LLVICSVCYW KRRQNILRAQ QIAARGAPYA KARTQFSHDI 600 QMSRHHNHGH TRTAAENGPS LLS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00113 | PLN00113 | 1.0e-10 | 416 | 514 | 99 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 7.0e-17 | 200 | 359 | 175 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 4.0e-63 | 30 | 364 | 351 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 0 | 21 | 623 | 605 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAF16758.1 | 0 | 1 | 621 | 2 | 624 | AC010155_11 F3M18.23 [Arabidopsis thaliana] |
| EMBL | CBI30598.1 | 0 | 24 | 623 | 23 | 624 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_174156.1 | 0 | 1 | 623 | 2 | 626 | AtRLP4 (Receptor Like Protein 4); protein binding [Arabidopsis thaliana] |
| RefSeq | XP_002305781.1 | 0 | 28 | 623 | 1 | 596 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509445.1 | 0 | 1 | 623 | 1 | 629 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rj0_A | 3e-16 | 397 | 546 | 608 | 752 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3rj0_A | 0.00000002 | 425 | 512 | 396 | 483 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3rj0_A | 0.000001 | 432 | 513 | 451 | 532 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3rj0_A | 0.000003 | 446 | 512 | 393 | 459 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3rj0_A | 0.000004 | 432 | 512 | 475 | 555 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
