| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.004G047300.1 |
| Family | CBM57 |
| Protein Properties | Length: 625 Molecular Weight: 68652.9 Isoelectric Point: 7.7473 |
| Chromosome | Chromosome/Scaffold: 04 Start: 3616470 End: 3623432 |
| Description | receptor like protein 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM57 | 211 | 360 | 3.1e-26 |
| DYSGDHWGGDRFWSPIKTFGQGSDLARSTESGIKKASNAPNYYPEALYQTALVSTDTQPDLAYTMDVDPNRNYSIWLHFAEIDSSVTAAGKRVFDILING VVAFEDVDIVKMSGDRYTALVLNTTVTVSGRILTIGLHPKEGSHAIINAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 625 Download |
| MQRFPFLLWT LLFCLAFSTC IARQAPWVMR ISCGARLNVH TAPTNTLWYK DFAYTGGIPA 60 NATRPSYISP PLKTLRYFPL SSGPNNCYNI NRVPKGHYTV RVFFGLDGHR NFDNEPLFDI 120 SIEGTQIYSL KSGWTNHDDQ VFTEALVFLT DGTASICFHS TGHGDPAILS IEILQMEDRA 180 YYFGPAWVQG IILRTAARLS CGNGKPKFDV DYSGDHWGGD RFWSPIKTFG QGSDLARSTE 240 SGIKKASNAP NYYPEALYQT ALVSTDTQPD LAYTMDVDPN RNYSIWLHFA EIDSSVTAAG 300 KRVFDILING VVAFEDVDIV KMSGDRYTAL VLNTTVTVSG RILTIGLHPK EGSHAIINAI 360 EVFEILTAES KTSLEEVRAL QSLKSALSLP LRFGWNGDPC VPQEHPWNGA DCHFDKTSSK 420 WFIDGLSLDN QGLRGFLPND ISRLHHLQNI NLSDNSIRGA VPPSIGTIPG LVVLDLSYNS 480 FNGSIPESLG QLTSLRRLNL NGNSLSGRVP AALGGRLLHG ASFNFTDNAG LCGIPGLRTC 540 GPHLSAGEKI GIAFGTSVGF LLMVICSMCW WKRRQNILRA QQIAERGAPY AKARTQLSHD 600 IQMTRHYSHG NARTAAENGP SLLS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11721 | Malectin | 2.0e-5 | 28 | 171 | 164 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| PLN00113 | PLN00113 | 7.0e-8 | 375 | 486 | 117 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 2.0e-18 | 198 | 360 | 175 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 4.0e-73 | 31 | 365 | 352 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 0 | 8 | 624 | 621 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30598.1 | 0 | 24 | 624 | 22 | 624 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_174156.1 | 0 | 22 | 624 | 22 | 626 | AtRLP4 (Receptor Like Protein 4); protein binding [Arabidopsis thaliana] |
| RefSeq | XP_002279791.1 | 0 | 29 | 624 | 1 | 600 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305781.1 | 0 | 29 | 624 | 1 | 596 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509445.1 | 0 | 10 | 624 | 11 | 629 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rgz_A | 0.00000000000001 | 414 | 547 | 628 | 755 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.0000000006 | 423 | 513 | 468 | 558 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.0000006 | 445 | 540 | 394 | 489 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.000003 | 426 | 513 | 399 | 486 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.00002 | 433 | 514 | 454 | 535 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
