sublogo

Seed proteins  | Seed genomic context  | Seed protein 3D structures  |  Structural homologs

Seed protein information help

APIS family ID ADG.17
Inhibited defense system toxin-antitoxin (TA)
CLAN ID CLAN067
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
YP_009008111.1 gene_page: ADG.17 83 9901.44 6.7102 0.5
Phage property
Phage Genbank id
Sulfolobus monocaudavirus SMV1 GCF_000917075.1
PMID/References PMID:38698035
PDB structures ;
Pfam domains
Phrog phrog_12592,phrog_12592
Host taxa d__Archeae;;;;;;
Gene Location Start: 44113;  End: 44364;  Strand: -
Description ADG.17 and its homologs in archaea viruses act as antitoxins to inhibit host toxin Doc. It's the first example of an inhibitor of an archaeal toxin-antitoxin immune system.

Seed genomic context      Download table help

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.54 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

MKCEDIINSM  VQYCAIFNRE  FEMVATHKLT  DEQKKILERM  HNRVDYILET  YKEYLDALAE60
FDRTGVLKIH  GKVIYVKENK  NQG83

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database


6,599 Pageviews
Mar. 06th - Apr. 06th