| APIS family ID | APIS009 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN008 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:3023633 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF11058.11 | |||||||||||||
| Phrog | phrog_1055,phrog_17610 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: 34087; End: 34287; Strand: - | |||||||||||||
| Description | Ral of phage λ can activate the activity of the MTase and thereby accelerate protection of the phage DNA. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_001416.1 | 32025 | 32810 | - | NP_040617.1 | 261 | 29688.64 | -6.5 | 4.8663 | RecT-like ssDNA annealing protein | phrog_2760 ; phrog_8375 ; phrog_17377 ; phrog_12233 ; phrog_2449 ; phrog_10056 ; phrog_252 | PF03837.17 ;PF03837.17 |
| NC_001416.1 | 32816 | 33232 | - | NP_040618.1 | 138 | 16346.28 | -3.5 | 5.7699 | gam-like host nuclease inhibitor | phrog_259 ; phrog_26899 | PF06064.14 |
| NC_001416.1 | 33187 | 33330 | - | NP_040619.1 | 47 | 5518.58 | 3.5 | 10.2786 | Kil protein for bacterial septation inhibition | phrog_3924 ; phrog_2055 ; phrog_20024 ; phrog_2461 | PF06301.14 |
| NC_001416.1 | 33299 | 33463 | - | NP_040620.1 | 54 | 6046.92 | 2.0 | 9.0019 | CIII anti-termination | phrog_35423 ; phrog_550 ; phrog_2461 | PF02061.19 |
| NC_001416.1 | 33536 | 33904 | - | NP_040621.1 | 122 | 13780.39 | -12.0 | 4.0718 | hypothetical protein | phrog_646 | PF10800.11 |
| NC_001416.1 | 34087 | 34287 | - | NP_040622.1 | 66 | 7603.86 | 3.0 | 8.5100 | restriction alleviation ral | phrog_1055 ; phrog_17610 | PF11058.11 |
| NC_001416.1 | 34271 | 34357 | - | NP_040623.1 | 28 | 3698.81 | -11.5 | 3.2418 | hypothetical protein | phrog_16060 | |
| NC_001416.1 | 35037 | 35438 | - | NP_040625.1 | 133 | 15373.80 | 18.0 | 11.3155 | anti-termination protein N-like | phrog_271 | PF11438.11 |
| NC_001416.1 | 35825 | 36259 | - | NP_040626.1 | 144 | 15967.15 | 6.5 | 9.3071 | RexB-like exclusion protein | phrog_14878 | PF15968.8 |
| NC_001416.1 | 36275 | 37114 | - | NP_040627.1 | 279 | 31254.91 | 6.5 | 8.8440 | RexA-like exclusion protein | phrog_12654 | PF15969.8 |
| NC_001416.1 | 34482 | 35036 | + | NP_597779.1 | 184 | 21557.37 | 7.0 | 9.6932 | SieB superinfection exclusion | phrog_6399 | PF14163.9 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS009 | NP_040622.1 | 22 | HMM model | Member alignment |
|---|
| APIS | Contig | Range |
|---|---|---|
| APIS009 | NC_001416.1 | 32025 - 35036 |