| APIS family ID | APIS015 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN010 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Silas et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_7857 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: 65416; End: 65718; Strand: - | |||||||||||||
| Description | T4 internal-protein, a T2-restricting defense system was disabled by IpII. IpII restored T2 and T6 plaquing but did not further enhance T4 infection. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000866.4 | 63381 | 63557 | - | NP_049729.1 | 58 | 6611.00 | 2.0 | 10.3162 | hypothetical protein | phrog_1986 | |
| NC_000866.4 | 63557 | 63919 | - | NP_049730.1 | 120 | 13813.65 | -1.5 | 5.9896 | autonomous glycyl radical cofactor GrcA | phrog_21327 ; phrog_1209 ; phrog_32552 | PF01228.24 |
| NC_000866.4 | 63927 | 64256 | - | NP_049731.1 | 109 | 12835.07 | 4.5 | 9.3432 | hypothetical protein | phrog_29719 ; phrog_2049 ; phrog_11888 | |
| NC_000866.4 | 64253 | 64912 | - | NP_049732.1 | 219 | 25026.71 | 12.5 | 9.4437 | hypothetical protein | phrog_1488 | |
| NC_000866.4 | 64939 | 65355 | - | NP_049733.1 | 138 | 16078.57 | 7.0 | 9.7612 | endonuclease V N-glycosylase UV repair enzyme | phrog_1183 ; phrog_18345 | PF03013.17 |
| NC_000866.4 | 65416 | 65718 | - | NP_049734.1 | 100 | 11085.80 | 5.0 | 10.0101 | internal virion protein | phrog_8765 ; phrog_3155 ; phrog_2667 ; phrog_7857 ; phrog_15565 ; phrog_5341 ; phrog_8111 | |
| NC_000866.4 | 65834 | 66415 | - | NP_049735.1 | 193 | 21686.75 | 10.0 | 10.1965 | internal virion protein | phrog_8765 ; phrog_2667 ; phrog_15565 ; phrog_5341 ; phrog_35655 ; phrog_8111 | |
| NC_000866.4 | 66503 | 66997 | - | NP_049736.1 | 164 | 18691.56 | 8.5 | 10.0791 | glycoside hydrolase family protein | phrog_15410 ; phrog_7 ; phrog_33534 ; phrog_13211 | PF00959.22 |
| NC_000866.4 | 67035 | 67490 | - | NP_049737.1 | 151 | 17653.27 | -3.0 | 5.0111 | nudix hydrolase | phrog_9999 ; phrog_1198 ; phrog_1185 | PF00293.31 |
| NC_000866.4 | 67652 | 67960 | - | NP_049738.1 | 102 | 12155.99 | 0.0 | 6.2859 | hypothetical protein | phrog_35263 ; phrog_2203 | |
| NC_000866.4 | 67957 | 68319 | - | NP_049739.1 | 120 | 14154.75 | 4.5 | 8.9827 | hypothetical protein | phrog_2330 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS015 | NP_049734.1 | 34 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| AP019521_00117 | 93.000 | 2.62e-60 | 187 | 100% | Escherichia phage KIT01 | Escherichia | INPHARED | phrog_7857 phrog_2667 | |
| HE956709_00130 | 52.222 | 1.55e-22 | 92.0 | 90% | Yersinia phage phiR1-RT | Yersinia | INPHARED | phrog_7857 | |
| IMGVR_UViG_3300045988_040361|3300045988|Ga0495776_001689_155076_155378 | 93.023 | 1.33e-51 | 165 | 86% | IMGVR | phrog_7857 | |||
| KP202158_00128 | 51.111 | 1.36e-21 | 89.4 | 90% | Yersinia phage vB_YenM_TG1 | Yersinia | INPHARED | phrog_7857 | |
| KR269720_00074 | 93.000 | 6.51e-61 | 189 | 100% | Klebsiella phage PKO111 | Klebsiella | INPHARED | phrog_7857 | |
| KU878969_00113 | 94.000 | 1.45e-61 | 191 | 100% | Escherichia phage MX01 | Escherichia | INPHARED | phrog_7857 | |
| KY593455_00133 | 62.245 | 6.46e-34 | 120 | 98% | Yersinia phage fHe-Yen9-01 | Yersinia | INPHARED | phrog_8765 phrog_7857 | |
| MGV-GENOME-0377468_124 | 94.186 | 1.65e-52 | 167 | 86% | MGV | phrog_7857 | |||
| MGV-GENOME-0377499_216 | 92.000 | 9.06e-60 | 186 | 100% | MGV | phrog_7857 | |||
| MGV-GENOME-0377588_265 | 93.000 | 1.45e-60 | 188 | 100% | MGV | phrog_7857 | |||
| MGV-GENOME-0377667_253 | 93.023 | 1.37e-51 | 165 | 86% | MGV | phrog_7857 | |||
| MH051917_00166 | 93.000 | 1.50e-60 | 188 | 100% | Enterobacteria phage vB_EcoM_IME341 | Enterobacteria | INPHARED | phrog_7857 | |
| MK234886_00064 | 92.000 | 1.06e-59 | 186 | 100% | Escherichia phage AnYang | Escherichia | INPHARED | phrog_7857 phrog_2667 | |
| MK295203_00123 | 93.000 | 2.28e-60 | 187 | 100% | Escherichia phage vB_EcoM_005 | Escherichia | INPHARED | phrog_7857 phrog_2667 | |
| MN013081_00019 | 82.558 | 1.42e-44 | 147 | 86% | Klebsiella phage vB_KpnM_Potts1 | Klebsiella | INPHARED | phrog_7857 | |
| MN044033_00110 | 93.182 | 4.64e-54 | 172 | 88% | Klebsiella phage Marfa | Klebsiella | INPHARED | phrog_7857 | |
| MN106245_00120 | 94.186 | 2.62e-52 | 167 | 86% | Klebsiella phage EI | Klebsiella | INPHARED | phrog_7857 | |
| MN434095_00109 | 95.349 | 7.23e-54 | 171 | 86% | Klebsiella phage JIPh_Kp122 | Klebsiella | INPHARED | phrog_7857 | |
| MT446423_00066 | 92.000 | 8.59e-60 | 186 | 100% | Escherichia virus TH58 | Escherichia | INPHARED | phrog_7857 | |
| MW239157_00163 | 94.000 | 8.64e-62 | 191 | 100% | Klebsiella phage vB_KpnM_17-11 | Klebsiella | INPHARED | phrog_7857 | |
| MW325771_00143 | 77.551 | 4.71e-36 | 126 | 98% | Salmonella phage KM16 | Salmonella | INPHARED | phrog_7857 | |
| MZ375356_00098 | 100.000 | 9.39e-62 | 191 | 94% | Escherichia phage T4 | Escherichia | INPHARED | phrog_7857 | |
| MZ560701_00153 | 91.000 | 1.76e-58 | 182 | 100% | Escherichia phage vB_EcoM_TU01 | Escherichia | INPHARED | phrog_7857 | |
| MZ634347_00193 | 94.186 | 3.09e-52 | 167 | 86% | Klebsiella phage PWKp16 | Klebsiella | INPHARED | phrog_7857 | |
| NP_049734.1 | 100.000 | 4.29e-72 | 200 | 100% | T4 of E. coli | Escherichia coli | NCBI | phrog_7857 | |
| OK254198_00028 | 94.186 | 6.15e-53 | 169 | 86% | Escherichia phage PSD2001 | Escherichia | INPHARED | phrog_7857 | |
| OL770074_00008 | 93.000 | 1.40e-60 | 188 | 100% | Escherichia phage vB_EcoM-RPN187 | Escherichia | INPHARED | phrog_7857 | |
| OL870318_00109 | 92.000 | 8.78e-60 | 186 | 100% | Klebsiella phage UTI-K1 | Klebsiella | INPHARED | phrog_7857 | |
| OL964735_00119 | 100.000 | 1.08e-65 | 201 | 100% | Escherichia phage T4 | Escherichia | INPHARED | phrog_7857 | |
| OP172784_00207 | 91.000 | 5.07e-60 | 187 | 100% | Escherichia phage ECO07P1 | Escherichia | INPHARED | phrog_7857 | |
| OQ331036_00272 | 58.511 | 1.05e-29 | 110 | 94% | Yersinia phage MHG19 | Yersinia | INPHARED | phrog_7857 | |
| OQ721911_00120 | 94.000 | 4.53e-61 | 189 | 100% | Escherichia phage vB_VIPECOOM03 | Escherichia | INPHARED | phrog_7857 | |
| OV877765_00121 | 93.000 | 9.46e-61 | 188 | 100% | Escherichia phage UGJNEcP4 | Escherichia | INPHARED | phrog_7857 phrog_2667 | |
| uvig_234713_124 | 94.186 | 1.60e-52 | 167 | 86% | GPD | phrog_7857 |
| APIS | Contig | Range |
|---|---|---|
| APIS015 | NC_000866.4 | 63381 - 68319 |