| APIS family ID | APIS017 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | toxin-antitoxin (TA) | |||||||||||||
| CLAN ID | CLAN016 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:26395283 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF03496.17 | |||||||||||||
| Phrog | phrog_26651,phrog_15247,phrog_23015,phrog_802,phrog_15144,phrog_23966 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: 123454; End: 125502; Strand: - | |||||||||||||
| Description | T4 protein Alt (an ADP-ribosyltransferase) is injected with phage DNA, which chemically modifies the MazF toxin. ADP-ribosylated MazF has reduced cleavage activity, enabling the survival of the phage. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000866.4 | 120659 | 121753 | + | NP_049806.1 | 364 | 39733.51 | 3.5 | 8.9782 | baseplate tail tube cap | phrog_230 ; phrog_2875 | PF11091.11 |
| NC_000866.4 | 121753 | 122715 | + | NP_049807.1 | 320 | 34977.33 | -2.5 | 5.3004 | tail tube | phrog_45 | |
| NC_000866.4 | 122742 | 123032 | - | NP_049808.1 | 96 | 10704.19 | -5.0 | 4.3700 | hypothetical protein | phrog_1739 | PF17602.5 |
| NC_000866.4 | 123065 | 123268 | - | NP_049809.1 | 67 | 7382.04 | 6.5 | 10.4876 | hypothetical protein | phrog_15247 ; phrog_802 | |
| NC_000866.4 | 123265 | 123450 | - | NP_049810.1 | 61 | 6609.57 | -0.5 | 5.6727 | hypothetical protein | phrog_23015 ; phrog_802 | |
| NC_000866.4 | 123454 | 125502 | - | NP_049811.1 | 682 | 75817.56 | -1.5 | 6.2337 | Alt-like RNA polymerase ADP-ribosyltransferase | phrog_23015 ; phrog_15247 ; phrog_802 ; phrog_15144 ; phrog_23966 ; phrog_26651 | PF03496.17 |
| NC_000866.4 | 125560 | 125748 | - | NP_049812.1 | 62 | 7153.14 | -4.0 | 4.2331 | hypothetical protein | phrog_1976 | |
| NC_000866.4 | 125745 | 127208 | - | NP_049813.1 | 487 | 55292.65 | -0.5 | 6.3938 | DNA ligase | phrog_114 | PF01068.24 |
| NC_000866.4 | 127205 | 127474 | - | NP_049814.1 | 89 | 10833.17 | 3.0 | 7.8993 | DUF3045 domain-containing protein | phrog_2054 | PF11243.11 |
| NC_000866.4 | 127474 | 128310 | - | NP_049815.1 | 278 | 32429.93 | -0.5 | 6.3825 | hypothetical protein | phrog_420 | |
| NC_000866.4 | 128307 | 128765 | - | NP_049816.1 | 152 | 17089.47 | 3.5 | 9.0496 | hypothetical protein | phrog_652 | PF08010.14 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS017 | NP_049811.1 | 281 | HMM model | Member alignment |
|---|
| APIS | Contig | Range |
|---|---|---|
| APIS017 | NC_000866.4 | 120659 - 128765 |