APIS family ID | APIS020 | |||||||||||||
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Inhibited defense system | RecBCD | |||||||||||||
CLAN ID | CLAN016 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | PMID:10669596 36533901 | |||||||||||||
PDB structures | 8B1T; | |||||||||||||
Pfam domains | PF11043.11 | |||||||||||||
Phrog | phrog_656 | |||||||||||||
Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella; | |||||||||||||
Gene Location | Start: 26630; End: 26923; Strand: - | |||||||||||||
Description | Bacteriophage P22 Abc2 protein binds to the RecBCD enzyme from E. coli to promote phage growth and recombination; the RecBCD-Abc2 structure shows that Abc2 binds to the Chi-recognition domains of the RecC subunit in a position that might enable it to mediate the loading of phage recombinases onto its single-stranded DNA products. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
NC_002371.2 | 25964 | 26461 | - | NP_059592.1 | 165 | 18147.16 | -17.0 | 4.0025 | EaE | phrog_368 ; phrog_31590 ; phrog_492 ; phrog_614 ; phrog_14548 ; phrog_26126 ; phrog_10746 | |
NC_002371.2 | 26449 | 26619 | - | NP_059593.1 | 56 | 6633.80 | 5.5 | 10.4591 | hypothetical protein | phrog_4684 ; phrog_1117 | PF10930.11 |
NC_002371.2 | 26630 | 26923 | - | NP_059594.1 | 97 | 11620.18 | 3.5 | 8.9809 | abc2 anti-RecBCD | phrog_656 | PF11043.11 |
NC_002371.2 | 26970 | 27254 | - | NP_059595.1 | 94 | 10894.72 | 11.5 | 10.9204 | Abc1 | phrog_323 ; phrog_31591 | |
NC_002371.2 | 27254 | 27871 | - | NP_059596.1 | 205 | 23000.72 | -1.5 | 6.0295 | Erf-like ssDNA annealing protein | phrog_1097 ; phrog_10003 ; phrog_34817 ; phrog_2324 ; phrog_155 | PF04404.15 |
NC_002371.2 | 27868 | 28011 | - | NP_059597.1 | 47 | 5516.99 | -10.5 | 3.4959 | Erf recombination cofactor Arf | phrog_2445 | PF17585.5 |
NC_002371.2 | 28001 | 28189 | - | NP_059598.1 | 62 | 6949.59 | -4.5 | 4.1520 | Kil protein for bacterial septation inhibition | phrog_2394 | PF17519.5 |
NC_002371.2 | 28170 | 28328 | - | NP_059599.1 | 52 | 5733.73 | 4.0 | 9.3916 | CIII anti-termination | phrog_550 ; phrog_2461 | PF02061.19 |
NC_002371.2 | 24906 | 25499 | - | YP_063721.1 | 197 | 22345.14 | -6.0 | 4.9106 | EaD | phrog_34708 ; phrog_250 ; phrog_11761 ; phrog_38306 ; phrog_1138 ; phrog_19867 ; phrog_32305 ; phrog_20344 | PF13935.9 |
NC_002371.2 | 25496 | 25855 | - | YP_063722.1 | 119 | 13909.77 | -7.5 | 4.4910 | EaF | phrog_6018 | PF17526.5 |
NC_002371.2 | 25830 | 25967 | - | YP_063723.1 | 45 | 5081.57 | -2.0 | 4.8084 | hypothetical protein | phrog_25957 |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
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AF-Q32CA2-F1-model_v4 | 1 | 601 | 1 | 606 | 0.9876 | 0.9796 |
AF-Q8ZMB7-F1-model_v4 | 1 | 601 | 2 | 606 | 0.9812 | 0.9699 |
AF-P04993-F1-model_v4 | 1 | 601 | 2 | 606 | 0.9731 | 0.9627 |
AF-A0A0H3H2A9-F1-model_v4 | 1 | 601 | 2 | 610 | 0.9762 | 0.9619 |
AF-A0A0H3GX23-F1-model_v4 | 1 | 1080 | 1 | 1121 | 0.9808 | 0.9589 |
AF-Q8ZMB4-F1-model_v4 | 1 | 1080 | 1 | 1121 | 0.9793 | 0.9581 |
AF-Q32C99-F1-model_v4 | 1 | 1080 | 1 | 1121 | 0.9783 | 0.9573 |
AF-P07648-F1-model_v4 | 1 | 1080 | 1 | 1121 | 0.9682 | 0.9462 |
AF-Q32CA1-F1-model_v4 | 1 | 1141 | 5 | 1174 | 0.9558 | 0.9349 |
AF-A0A0H3GSM0-F1-model_v4 | 1 | 1135 | 5 | 1162 | 0.9432 | 0.9291 |
Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
---|---|---|---|---|---|---|
MGYP000868799281.pdb | 1 | 601 | 2 | 606 | 0.9735 | 0.9641 |
MGYP002472884262.pdb | 1 | 601 | 2 | 605 | 0.97 | 0.961 |
MGYP001104396436.pdb | 1 | 601 | 2 | 611 | 0.9691 | 0.9549 |
MGYP001152395759.pdb | 1 | 601 | 2 | 610 | 0.967 | 0.9528 |
MGYP001073940060.pdb | 1 | 601 | 2 | 609 | 0.9627 | 0.9504 |
MGYP000627624437.pdb | 1 | 601 | 2 | 610 | 0.9664 | 0.9499 |
MGYP001095023059.pdb | 1 | 601 | 1 | 616 | 0.9663 | 0.9476 |
MGYP000933771875.pdb | 1 | 601 | 3 | 611 | 0.9652 | 0.9461 |
MGYP003365269547.pdb | 2 | 601 | 1 | 614 | 0.9626 | 0.9451 |
MGYP000368278305.pdb | 2 | 601 | 1 | 638 | 0.9674 | 0.9347 |
Fam ID | Seed protein | Member count | Model | Alignment | APIS020 | NP_059594.1 | 65 | HMM model | Member alignment |
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APIS | Contig | Range |
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APIS020 | NC_002371.2 | 25964 - 25967 |