| APIS family ID | APIS025 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | Hachiman | |||||||||||||
| CLAN ID | CLAN024 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Yirmiya et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_5701 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis | |||||||||||||
| Gene Location | Start: 151219; End: 151380; Strand: + | |||||||||||||
| Description | Had1 (Hachiman anti-defense 1) is a Hachiman-inhibiting family of phage proteins. The mechanism of Hachiman defense is unknown. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| OM982671.1 | 148996 | 149421 | + | UPI12724.1 | 141 | 15975.02 | -1.0 | 6.2254 | hypothetical protein | phrog_3915 ; phrog_24282 | |
| OM982671.1 | 149440 | 149790 | + | UPI12725.1 | 116 | 13853.68 | -2.5 | 5.8488 | hypothetical protein | phrog_4224 | |
| OM982671.1 | 149812 | 150405 | + | UPI12726.1 | 197 | 23017.59 | 10.5 | 9.5841 | hypothetical protein | phrog_2776 | |
| OM982671.1 | 150405 | 151016 | + | UPI12727.1 | 203 | 23970.42 | -28.0 | 3.9304 | hypothetical protein | phrog_3205 | |
| OM982671.1 | 151006 | 151176 | + | UPI12728.1 | 56 | 6663.60 | -0.5 | 6.2037 | hypothetical protein | phrog_20223 | |
| OM982671.1 | 151219 | 151380 | + | UPI12729.1 | 53 | 6228.98 | 1.5 | 8.6196 | hypothetical protein | phrog_5701 | |
| OM982671.1 | 151385 | 151540 | + | UPI12730.1 | 51 | 6048.94 | -0.5 | 5.7710 | hypothetical protein | phrog_31176 | |
| OM982671.1 | 151584 | 151985 | + | UPI12731.1 | 133 | 14884.11 | 2.0 | 7.7365 | hypothetical protein | phrog_478 | |
| OM982671.1 | 152166 | 152342 | + | UPI12732.1 | 58 | 6832.13 | 10.0 | 10.3655 | hypothetical protein | phrog_23759 | |
| OM982671.1 | 152582 | 152701 | + | UPI12733.1 | 39 | 4532.01 | -5.0 | 3.7346 | hypothetical protein | ||
| OM982671.1 | 152780 | 153148 | + | UPI12734.1 | 122 | 13829.21 | -18.5 | 3.7617 | hypothetical protein | phrog_3460 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS025 | UPI12729.1 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| MW419087_00051 | 69.231 | 2.40e-16 | 73.2 | 96% | Bacillus phage 015DV004 | Bacillus | INPHARED | phrog_ | |
| MZ501263_00056 | 79.245 | 2.44e-23 | 90.9 | 100% | Bacillus phage 043JT007 | Bacillus | INPHARED | phrog_5701 | |
| OM728302_00212 | 89.130 | 7.44e-23 | 89.4 | 87% | Bacillus phage vB_BsuM-Goe24 | Bacillus | INPHARED | phrog_5701 | |
| UPI12729.1 | 100.000 | 1.58e-38 | 112 | 100% | SBSphiJ4 of B. subtilis | Bacillus subtilis | NCBI | phrog_5701 |
| APIS | Contig | Range |
|---|---|---|
| APIS025 | OM982671.1 | 148996 - 153148 |