| APIS family ID | APIS026 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | broad-spectrum counter-defense | |||||||||||||
| CLAN ID | CLAN025 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Silas et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_8261 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella; | |||||||||||||
| Gene Location | Start: 22169; End: 22468; Strand: + | |||||||||||||
| Description | Broad-spectrum counter-defense. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| LR535917.1 | 20175 | 20483 | + | VFR14532.1 | 102 | 12093.89 | 8.5 | 9.9169 | hypothetical protein | phrog_3921 | |
| LR535917.1 | 20522 | 20992 | + | VFR14534.1 | 156 | 18142.73 | 3.0 | 7.7280 | hypothetical protein | phrog_23206 | |
| LR535917.1 | 21038 | 21382 | + | VFR14536.1 | 114 | 13227.20 | -6.5 | 4.3865 | hypothetical protein | phrog_27024 | |
| LR535917.1 | 21603 | 21839 | + | VFR14538.1 | 78 | 8797.88 | 0.5 | 6.7060 | hypothetical protein | ||
| LR535917.1 | 21852 | 22115 | + | VFR14540.1 | 87 | 10508.31 | 6.0 | 9.9938 | hypothetical protein | ||
| LR535917.1 | 22169 | 22468 | + | VFR14542.1 | 99 | 11122.34 | 7.5 | 10.3434 | hypothetical protein | phrog_8261 | |
| LR535917.1 | 22573 | 23058 | + | VFR14544.1 | 161 | 18629.60 | 10.0 | 9.7311 | hypothetical protein | phrog_5043 | |
| LR535917.1 | 23152 | 23820 | + | VFR14546.1 | 222 | 25674.23 | 1.0 | 6.8600 | putative virion structural protein | phrog_3014 | |
| LR535917.1 | 24011 | 24694 | + | VFR14548.1 | 227 | 25298.77 | -1.0 | 5.8156 | hypothetical protein | phrog_2926 | |
| LR535917.1 | 24710 | 26230 | + | VFR14550.1 | 506 | 56485.90 | -18.0 | 4.5889 | hypothetical protein | phrog_3841 | |
| LR535917.1 | 26235 | 26471 | + | VFR14552.1 | 78 | 8514.80 | -1.0 | 5.6051 | hypothetical protein | phrog_8223 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS026 | VFR14542.1 | 3 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| LR535901_00027 | 69.697 | 1.80e-34 | 122 | 100% | Salmonella phage SPFM1 | Salmonella | INPHARED | phrog_8261 | |
| LR535906_00023 | 74.747 | 1.37e-40 | 138 | 100% | Salmonella phage SPFM8 | Salmonella | INPHARED | phrog_8261 | |
| VFR14542.1 | 100.000 | 1.75e-72 | 201 | 100% | Salmonella phage SPFM20 | Salmonella | NCBI | phrog_8261 |
| APIS | Contig | Range |
|---|---|---|
| APIS026 | LR535917.1 | 20175 - 26471 |