| APIS family ID | APIS033 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN007 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:7476171 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF14354.9 | |||||||||||||
| Phrog | phrog_6422,phrog_599 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS033 | YP_009168126.1 | 11 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS040 | 3.12E-41 | 1 | 72 | 72 | 142 | IMGVR_UViG_2778261704_000001|2778261704|2781089226 |
| APIS | Contig | Range |
|---|---|---|
| APIS033 | NC_027984.1 | - |