| APIS family ID | APIS034 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | O-antigen-based barrier | |||||||||||||
| CLAN ID | CLAN036 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Silas et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_1402,phrog_13897,phrog_23045 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella; | |||||||||||||
| Gene Location | Start: 35946; End: 36068; Strand: - | |||||||||||||
| Description | Putative O-antigen modifiers, interfere with O-antigen biosynthesis. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_042041.1 | 32234 | 32644 | + | YP_009615322.1 | 136 | 15098.82 | 0.5 | 6.6950 | hypothetical protein | phrog_15451 | |
| NC_042041.1 | 32671 | 32952 | + | YP_009615323.1 | 93 | 10306.95 | 2.5 | 9.0828 | hypothetical protein | phrog_13707 | |
| NC_042041.1 | 32965 | 33552 | - | YP_009615324.1 | 195 | 22436.60 | 7.5 | 9.4710 | DNA polymerase | phrog_15833 ; phrog_1252 ; phrog_11133 ; phrog_18505 | |
| NC_042041.1 | 33542 | 34378 | - | YP_009615325.1 | 278 | 31552.07 | 22.5 | 9.6264 | endonuclease | phrog_681 ; phrog_559 | PF13455.9 |
| NC_042041.1 | 34375 | 35898 | - | YP_009615326.1 | 507 | 58127.38 | -0.5 | 6.4470 | DNA polymerase | phrog_1252 ; phrog_34024 ; phrog_18505 ; phrog_23499 | |
| NC_042041.1 | 35946 | 36068 | - | YP_009615327.1 | 40 | 4963.65 | 2.0 | 9.8665 | hypothetical protein | phrog_23045 ; phrog_13897 ; phrog_1402 | |
| NC_042041.1 | 36117 | 36920 | - | YP_009615328.1 | 267 | 28844.66 | 1.5 | 6.8419 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | phrog_7011 | |
| NC_042041.1 | 37007 | 38131 | - | YP_009615329.1 | 374 | 42379.35 | -3.0 | 6.0863 | exonuclease | phrog_69 | PF10926.11 |
| NC_042041.1 | 38136 | 38990 | - | YP_009615330.1 | 284 | 30934.77 | -23.0 | 4.2290 | hypothetical protein | phrog_11133 ; phrog_27827 | |
| NC_042041.1 | 39131 | 39361 | + | YP_009615331.1 | 76 | 9138.29 | 4.0 | 9.1714 | hypothetical protein | phrog_10768 ; phrog_16432 | |
| NC_042041.1 | 39354 | 39551 | + | YP_009615332.1 | 65 | 7558.44 | -7.0 | 4.0380 | hypothetical protein | phrog_5806 ; phrog_4173 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS034 | YP_009615327.1 | 54 | HMM model | Member alignment |
|---|
| APIS | Contig | Range |
|---|---|---|
| APIS034 | NC_042041.1 | 32234 - 39551 |