sublogo
Home Family list Seed list Statistics Download Help About Annotate
Links
dbAPIS github
PADLOC
DefenseFinder
Tracking Anti-CRISPR Names
anti-CRISPRdb
AcrDB
Cite us: nar/gkad932

Seed proteins  | Seed genomic context  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS090
Inhibited defense system restriction-modification (RM)
CLAN ID CLAN034
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
NP_049749.1 gene_page: IpI 95 10176.80 9.6274 3.0
Phage property
Phage Assembly id
T4 of E. coli GCF_000836945.1
PMID/References PMID:17188297 18037438
PDB structures 2JUB;
Pfam domains PF11634.11
Phrog phrog_4363
Host taxa d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli
Gene Location Start: 73591;  End: 73878;  Strand: -
Description Restriction endonuclease inhibitor IpI blocks the ancestral two-component type IV R-M system and represents a third generation bacteriophage defense against restriction nucleases of the Gmr type.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM
NC_000866.4 70360 70623 - NP_049744.1 87 10199.45 -7.0 4.2080 hypothetical protein
NC_000866.4 71253 71918 - NP_049745.2 221 26073.77 14.5 10.0776 homing endonuclease phrog_15209 ; phrog_7168 ; phrog_37840 ; phrog_19446 ; phrog_447 ; phrog_314 PF01541.27
NC_000866.4 72628 72915 - NP_049746.1 95 11153.69 -3.0 4.8667 hypothetical protein
NC_000866.4 72918 73328 - NP_049747.1 136 16034.61 -6.0 4.6254 hypothetical protein
NC_000866.4 73329 73514 - NP_049748.1 61 6557.94 1.0 7.7990 hypothetical protein
NC_000866.4 73591 73878 - NP_049749.1 95 10176.80 3.0 9.6274 internal virion protein phrog_4363 PF11634.11
NC_000866.4 73952 74410 - NP_049750.1 152 17244.53 -4.5 4.9749 RNA ligase
NC_000866.4 74407 74649 - NP_049751.1 80 8730.81 -9.0 4.0694 tail fiber chaperone phrog_1002 PF17594.5
NC_000866.4 74649 75374 - NP_049752.1 241 27329.15 -5.5 4.8518 deoxynucleoside monophosphate kinase
NC_000866.4 75424 75954 - NP_049753.1 176 19712.27 -9.5 4.1283 tail protein phrog_45 PF06841.15
NC_000866.4 76061 76885 - NP_049754.1 274 31610.09 31.0 10.7851 DNA end protector

Seed genomic context- JBrowse     

PDB structure: 2JUB ; Download help

Full Sequence      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS090 NP_049749.1 38 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN034

APIS090 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
HQ829472_00267 58.511 1.24e-29 109 99% Escherichia phage Bp7 Escherichia INPHARED PF11634 phrog_4363
IMGVR_UViG_638276012_000001|638276012|638301045 88.421 1.26e-52 167 100% IMGVR PF11634 phrog_4363
KM407600_00149 87.368 4.44e-52 166 100% Shigella phage Shf125875 Shigella INPHARED PF11634 phrog_4363
KU925172_00121 91.579 5.00e-54 171 100% Escherichia phage PE37 Escherichia INPHARED PF11634 phrog_4363
KY703222_00263 86.316 1.62e-51 165 100% Escherichia phage phiC120 Escherichia INPHARED PF11634 phrog_4363
MGV-GENOME-0377451_246 98.947 1.21e-60 188 100% MGV PF11634 phrog_4363
MGV-GENOME-0377517_210 86.316 1.67e-51 165 100% MGV PF11634 phrog_4363
MGV-GENOME-0377573_124 88.421 1.10e-52 168 100% MGV PF11634 phrog_4363
MH051915_00130 96.842 2.75e-59 184 100% Enterobacteria phage vB_EcoM_IME339 Enterobacteria INPHARED PF11634 phrog_4363
MH992122_00149 87.368 9.27e-52 165 100% Escherichia phage OLB35 Escherichia INPHARED PF11634 phrog_4363
MK047718_00016 88.421 1.16e-52 167 100% Escherichia phage p000y Escherichia INPHARED PF11634 phrog_4363
MK962750_00145 94.737 2.08e-56 177 100% Shigella phage CM8 Shigella INPHARED PF11634 phrog_4363
MN850621_00206 57.447 4.72e-29 108 99% Escherichia phage dhabil Escherichia INPHARED PF11634 phrog_4363
MN850622_00057 88.421 2.65e-52 167 100% Escherichia phage mobillu Escherichia INPHARED PF11634 phrog_4363
MT176424_00148 96.842 3.13e-59 184 100% Citrobacter phage PhiZZ6 Citrobacter INPHARED PF11634 phrog_4363
MT682713_00148 98.958 4.70e-59 184 100% Escherichia phage vB_EcoM_Ozark Escherichia INPHARED PF11634 phrog_4363
MW630116_00184 87.368 1.60e-52 167 100% Escherichia phage vB_EcoM-ZQ3 Escherichia INPHARED PF11634 phrog_4363
MZ170041_00152 89.583 2.79e-48 157 100% Escherichia phage vB_EcoM_FN Escherichia INPHARED PF11634 phrog_4363
MZ234025_00214 86.316 1.79e-51 164 100% Escherichia phage vB_EcoM-172859UKE1 Escherichia INPHARED PF11634 phrog_4363
MZ868638_00121 87.368 5.60e-52 166 100% Escherichia phage vB_EcoM-pEK20 Escherichia INPHARED PF11634 phrog_4363
NP_049749.1 100.000 4.96e-68 189 100% NCBI PF11634 phrog_4363
OK331996_00155 90.526 7.84e-54 171 100% Escherichia phage vB_EcoM-G157lw Escherichia INPHARED PF11634 phrog_4363
OL615012_00146 97.895 1.98e-59 185 100% Shigella phage vB_SboM_Phaginator Shigella INPHARED PF11634 phrog_4363
OL770107_00019 56.383 1.66e-28 107 99% Escherichia phage CLB_P2 Escherichia INPHARED PF11634 phrog_4363
OL960577_00154 87.368 9.48e-52 165 100% Escherichia phage vB_EcoM_SA35RD Escherichia INPHARED PF11634 phrog_4363
ON210139_00132 98.947 4.69e-60 186 100% Escherichia phage EC128 Escherichia INPHARED PF11634 phrog_4363
ON506924_00147 97.917 8.34e-58 181 100% Escherichia phage vB_EcoM_SCS4 Escherichia INPHARED PF11634 phrog_4363
ON528725_00106 88.421 1.07e-52 168 100% Shigella phage ESh15 Shigella INPHARED PF11634 phrog_4363
ON528743_00197 88.421 7.87e-48 155 100% Shigella phage ESh33 Shigella INPHARED PF11634 phrog_4363
ON720975_00049 98.947 3.09e-60 187 100% Salmonella phage GRNsp7 Salmonella INPHARED PF11634 phrog_4363
ON782582_00205 89.474 1.42e-53 170 100% Escherichia phage ECP52 Escherichia INPHARED PF11634 phrog_4363
OP870147_00153 87.368 6.89e-52 166 100% Escherichia phage vB_Eco_F31 Escherichia INPHARED PF11634 phrog_4363
OQ067374_00245 87.368 1.03e-51 165 100% Escherichia phage a20 Escherichia INPHARED PF11634 phrog_4363
OQ174503_00243 98.947 1.18e-60 188 100% Escherichia phage REP4 Escherichia INPHARED PF11634 phrog_4363
OQ349392_00128 97.895 7.60e-60 186 100% Escherichia phage KIT06 Escherichia INPHARED PF11634 phrog_4363
OQ599310_00238 87.368 1.60e-52 167 100% Escherichia phage 55 Escherichia INPHARED PF11634 phrog_4363
OQ703618_00034 88.421 1.79e-52 167 100% Escherichia phage GADS24 Escherichia INPHARED PF11634 phrog_4363
uvig_585812_148 70.526 5.68e-36 126 96% GPD PF11634 phrog_4363