| APIS family ID | APIS101 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | DNA repair | |||||||||||||
| CLAN ID | CLAN040 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID: 6776115 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF18880.5,PF18880.5 | |||||||||||||
| Phrog | phrog_26433,phrog_26433 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis | |||||||||||||
| Gene Location | Start: 82847; End: 83101; Strand: + | |||||||||||||
| Description | Uracil-DNA-glycosylase inhibitor. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_031039.1 | 80397 | 80933 | + | YP_009283003.1 | 178 | 21158.48 | -22.5 | 4.1198 | non-homologous end joining protein | phrog_26975 | |
| NC_031039.1 | 80987 | 81790 | + | YP_009283004.1 | 267 | 31826.51 | 20.0 | 10.2238 | hypothetical protein | phrog_34156 | |
| NC_031039.1 | 81803 | 81940 | + | YP_009283005.1 | 45 | 5175.01 | 2.0 | 9.5605 | hypothetical protein | phrog_29370 | |
| NC_031039.1 | 81906 | 82151 | + | YP_009283006.1 | 81 | 9850.53 | 3.0 | 9.2383 | hypothetical protein | phrog_35549 | |
| NC_031039.1 | 82205 | 82501 | - | YP_009283007.1 | 98 | 11294.96 | 5.5 | 10.0042 | DNA binding protein | phrog_379 | PF00216.26 |
| NC_031039.1 | 82847 | 83101 | + | YP_009283008.1 | 84 | 9475.72 | -11.5 | 3.8702 | uracil-DNA-glycosylase inhibitor | phrog_26433 ; phrog_26433 | PF18880.5 ;PF18880.5 |
| NC_031039.1 | 83356 | 84846 | + | YP_009283009.1 | 496 | 58042.53 | -1.0 | 6.2925 | polymerase | ||
| NC_031039.1 | 84871 | 85089 | + | YP_009283010.1 | 72 | 8464.61 | -0.5 | 5.8506 | hypothetical protein | phrog_30825 | |
| NC_031039.1 | 85151 | 85546 | + | YP_009283011.1 | 131 | 15153.62 | -5.5 | 4.4868 | hypothetical protein | phrog_34649 | |
| NC_031039.1 | 85631 | 85975 | + | YP_009283012.1 | 114 | 13195.03 | -1.0 | 5.7571 | hypothetical protein | phrog_32799 | |
| NC_031039.1 | 86043 | 86369 | + | YP_009283013.1 | 108 | 12702.86 | -5.0 | 4.5704 | hypothetical protein | phrog_13188 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001038460919.pdb | 1 | 84 | 1 | 84 | 0.9894 | 0.9839 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS101 | YP_009283008.1 | 3 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| MW749003_00278 | 89.400 | 3.196E-47 | 159 | 1.000% | Bacillus phage vB_BspM_Internexus | Bacillus | INPHARED | PF18880 | phrog_26433 |
| OM728297_00120 | 88.200 | 2.134E-46 | 156 | 1.000% | Bacillus phage vB_BsuM-Goe21 | Bacillus | INPHARED | PF18880 | phrog_26433 |
| YP_009283008.1 | 100.000 | 4.157E-50 | 167 | 1.000% | Bacillus phage AR9 | Bacillus subtilis | NCBI | PF18880 PF18880 | phrog_26433 phrog_26433 |