| APIS family ID | APIS108 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN046 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:10686096 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF18818.6,PF08401.16 | |||||||||||||
| Phrog | phrog_7245 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | This anti-restriction protein is able in vitro to protect the single-stranded DNA against the activity of type II restriction endonuclease HhaI. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3GV37-F1-model_v4 | 17 | 316 | 19 | 313 | 0.9386 | 0.889 |
| AF-A0A0H3GT69-F1-model_v4 | 31 | 316 | 5 | 317 | 0.8633 | 0.8333 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000368701906.pdb | 31 | 316 | 29 | 315 | 0.9688 | 0.8804 |
| MGYP001173146907.pdb | 35 | 316 | 1 | 278 | 0.9417 | 0.8732 |
| MGYP000173826674.pdb | 33 | 316 | 1 | 284 | 0.9139 | 0.8657 |
| MGYP003138466834.pdb | 35 | 316 | 1 | 277 | 0.9149 | 0.8652 |
| MGYP000737103407.pdb | 16 | 315 | 17 | 327 | 0.9027 | 0.8651 |
| MGYP003643821487.pdb | 39 | 316 | 1 | 276 | 0.933 | 0.8646 |
| MGYP000075178263.pdb | 39 | 316 | 1 | 275 | 0.9213 | 0.8631 |
| MGYP001027394170.pdb | 30 | 316 | 1 | 290 | 0.9041 | 0.8618 |
| MGYP003110943670.pdb | 35 | 316 | 1 | 277 | 0.909 | 0.8613 |
| MGYP003625092298.pdb | 38 | 316 | 1 | 277 | 0.9206 | 0.8604 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS108 | WP_099065648.1 | 259 | HMM model | Member alignment |
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