| APIS family ID | APIS111 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN047 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:2934296 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_1384,phrog_1384 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: 35877; End: 36602; Strand: + | |||||||||||||
| Description | Methylcarbamoylase for DNA modification. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_000929.1 | 32975 | 33502 | + | NP_050654.1 | 175 | 20309.65 | -9.5 | 4.4390 | tail fiber assembly protein | phrog_105 ; phrog_11571 ; phrog_3792 ; phrog_24494 ; phrog_188 ; phrog_136 ; phrog_21546 ; phrog_7784 | PF02413.22 |
| NC_000929.1 | 33531 | 34064 | - | NP_602302.1 | 177 | 20698.36 | -4.0 | 4.9482 | tail fiber assembly protein | phrog_105 ; phrog_11571 ; phrog_3792 ; phrog_24494 ; phrog_136 ; phrog_21546 | PF02413.22 |
| NC_000929.1 | 34067 | 35053 | - | NP_602303.1 | 328 | 35355.06 | 4.5 | 8.1276 | tail fiber protein | phrog_6202 ; phrog_5454 ; phrog_2631 ; phrog_3100 ; phrog_6683 ; phrog_7032 ; phrog_26292 ; phrog_21834 ; phrog_8713 ; phrog_17305 | PF12604.13 |
| NC_000929.1 | 35092 | 35673 | + | NP_050655.1 | 193 | 21766.26 | 14.0 | 10.7571 | DNA invertase | phrog_8275 ; phrog_664 ; phrog_125 | PF00239.26 ;PF02796.20 |
| NC_000929.1 | 35768 | 35956 | + | NP_050656.1 | 62 | 7413.70 | 8.5 | 9.0971 | gpCom control of modification | phrog_13819 ; phrog_6417 | PF10122.14 |
| NC_000929.1 | 35877 | 36602 | + | NP_050657.1 | 241 | 28277.51 | 22.0 | 10.4373 | Mom-like DNA modification protein | phrog_1384 ; phrog_1384 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q32I99-F1-model_v4 | 11 | 241 | 1 | 231 | 0.9856 | 0.9474 |
| AF-Q32F84-F1-model_v4 | 11 | 241 | 11 | 241 | 0.9843 | 0.9336 |
| AF-Q2G0U6-F1-model_v4 | 16 | 222 | 1 | 161 | 0.7362 | 0.6 |
| AF-A0A175W5V5-F1-model_v4 | 27 | 224 | 4 | 181 | 0.6744 | 0.5755 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003120403553.pdb | 28 | 241 | 3 | 213 | 0.9163 | 0.8606 |
| MGYP001012725986.pdb | 26 | 241 | 15 | 227 | 0.9357 | 0.8498 |
| MGYP000900391705.pdb | 46 | 241 | 1 | 196 | 0.9363 | 0.8466 |
| MGYP001319011596.pdb | 28 | 241 | 13 | 227 | 0.9235 | 0.8451 |
| MGYP003480606890.pdb | 28 | 241 | 10 | 227 | 0.914 | 0.8445 |
| MGYP001239259472.pdb | 21 | 241 | 1 | 226 | 0.8901 | 0.8402 |
| MGYP000203950727.pdb | 28 | 241 | 28 | 241 | 0.9409 | 0.8339 |
| MGYP000246947338.pdb | 20 | 241 | 1 | 226 | 0.8981 | 0.8314 |
| MGYP003119054010.pdb | 27 | 241 | 14 | 224 | 0.9029 | 0.8256 |
| MGYP003562828538.pdb | 27 | 241 | 13 | 229 | 0.9017 | 0.8186 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS111 | NP_050657.1 | 155 | HMM model | Member alignment |
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