| APIS family ID | APIS119 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN051 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:28509398 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_32226,phrog_32226,phrog_1629,phrog_1629 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: 9995; End: 10435; Strand: - | |||||||||||||
| Description | Ulx is a protein included in the P1 antirestriction system. It acts as a chaperone or packaging factor to increase the amount of DarB incorporated into the virion. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_005856.1 | 1518 | 1829 | + | YP_006473.1 | 103 | 11314.15 | 3.5 | 10.1451 | C8 | phrog_1968 | |
| NC_005856.1 | 2077 | 2637 | + | YP_006474.1 | 186 | 21328.83 | 21.5 | 10.6336 | Ref-like RecA filament endonuclease | phrog_5977 ; phrog_1588 ; phrog_2321 ; phrog_35096 | PF16786.10 |
| NC_005856.1 | 2716 | 3468 | + | YP_006475.1 | 250 | 28934.36 | 3.0 | 7.7913 | Mat | phrog_22054 ; phrog_1837 ; phrog_35046 | |
| NC_005856.1 | 3544 | 6456 | - | YP_006476.1 | 970 | 111458.50 | 3.0 | 6.7683 | type III restriction-modification system endonuclease | phrog_32711 ; phrog_11902 | PF19778.4 ;PF04851.20 ;PF00270.34 |
| NC_005856.1 | 9750 | 9998 | - | YP_006477.1 | 82 | 9664.01 | 5.0 | 10.1725 | Lxc | phrog_2160 | |
| NC_005856.1 | 9995 | 10435 | - | YP_006478.1 | 146 | 17080.31 | -3.0 | 5.0501 | Ulx-like anti-restriction | phrog_32226 ; phrog_32226 ; phrog_1629 ; phrog_1629 | |
| NC_005856.1 | 10469 | 17236 | - | YP_006479.1 | 2255 | 251542.55 | -33.5 | 5.2675 | N-6 DNA methylase | phrog_21829 ; phrog_21007 ; phrog_29705 ; phrog_1685 ; phrog_10818 ; phrog_11801 | PF00176.28 ;PF02384.21 ;PF07669.16 ;PF00271.36 ;PF04851.20 |
| NC_005856.1 | 17312 | 19021 | + | YP_006480.1 | 569 | 62749.98 | -14.0 | 4.8392 | portal protein | phrog_1497 ; phrog_17253 | |
| NC_005856.1 | 19014 | 20033 | + | YP_006481.1 | 339 | 36882.96 | -4.5 | 5.4720 | tail fiber protein | phrog_1801 | |
| NC_005856.1 | 20013 | 20228 | - | YP_006482.1 | 71 | 7947.13 | 4.5 | 9.3357 | LydE | ||
| NC_005856.1 | 20078 | 20332 | - | YP_006483.1 | 84 | 9936.98 | 12.0 | 11.8504 | holin | phrog_21930 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS119 | YP_006478.1 | 51 | HMM model | Member alignment |
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