| APIS family ID | APIS124 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN028 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF18788.6 | |||||||||||||
| Phrog | phrog_1620 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS031,APIS143 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000093852061.pdb | 15 | 118 | 1 | 105 | 0.8834 | 0.6519 |
| MGYP000978432647.pdb | 17 | 152 | 3 | 130 | 0.8121 | 0.647 |
| MGYP001448806754.pdb | 17 | 162 | 1 | 122 | 0.7518 | 0.6107 |
| MGYP000588437991.pdb | 15 | 145 | 1 | 153 | 0.7255 | 0.5259 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS124 | IMGVR_UViG_3300037502_004185|3300037502|Ga0310151_0000105_71832_72464 | 6 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300037502_004185|3300037502|Ga0310151_0000105_71832_72464 | 100.000 | 1.120E-121 | 381 | 1.000% | Vibrio | IMGVR | PF18788 | phrog_1620 | |
| IMGVR_UViG_2684623128_000006|2684623128|2686905450 | 84.600 | 6.333E-116 | 364 | 0.986% | Vibrio alginolyticus | IMGVR | PF18788 | phrog_1620 | |
| IMGVR_UViG_3300007102_000107|3300007102|Ga0102541_143109034 | 86.700 | 1.741E-119 | 374 | 0.986% | Vibrio | IMGVR | PF18788 | phrog_1620 | |
| IMGVR_UViG_2551306406_000007|2551306406|2552956687 | 84.500 | 8.681E-116 | 364 | 0.986% | Vibrio alginolyticus | IMGVR | PF18788 | phrog_1620 | |
| IMGVR_UViG_2579778703_000007|2579778703|2580635285 | 86.600 | 4.930E-120 | 376 | 0.990% | Vibrio parahaemolyticus | IMGVR | PF18788 | phrog_1620 | |
| IMGVR_UViG_2627853916_000003|2627853916|2629496297 | 86.800 | 1.270E-119 | 375 | 0.986% | Vibrio parahaemolyticus | IMGVR | PF18788 | phrog_1620 |