| APIS family ID | APIS129 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | AVAST (Antiviral STAND) | |||||||||||||
| CLAN ID | CLAN053 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:35951700 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia; | |||||||||||||
| Gene Location | Start: 2223; End: 2516; Strand: + | |||||||||||||
| Description | Lidtsur-6, Lidtsur-17 and Forsur-7 were active in phage plaque assays and restored phage propagation on Avs-containing E. coli. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| NC_048177.1 | 1 | 393 | + | YP_009821599.1 | 130 | 14694.79 | -7.5 | 4.2494 | SAM-dependent methyltransferase | phrog_2226 | |
| NC_048177.1 | 530 | 1054 | + | YP_009821600.1 | 174 | 19238.90 | 6.5 | 9.6111 | hypothetical protein | phrog_1448 | |
| NC_048177.1 | 1130 | 1435 | + | YP_009821601.1 | 101 | 10883.29 | -8.5 | 4.1720 | hypothetical protein | ||
| NC_048177.1 | 1513 | 1785 | + | YP_009821602.1 | 90 | 9845.16 | -8.5 | 4.2700 | hypothetical protein | ||
| NC_048177.1 | 1861 | 2157 | + | YP_009821603.1 | 98 | 10435.75 | -12.5 | 3.8158 | hypothetical protein | ||
| NC_048177.1 | 2223 | 2516 | + | YP_009821604.1 | 97 | 10076.54 | -8.0 | 3.9150 | hypothetical protein | ||
| NC_048177.1 | 2558 | 2875 | + | YP_009821605.1 | 105 | 10916.23 | -11.5 | 3.8382 | hypothetical protein | ||
| NC_048177.1 | 2875 | 2976 | + | YP_009821606.1 | 33 | 3641.46 | 4.0 | 9.9243 | hypothetical protein | ||
| NC_048177.1 | 2986 | 3162 | + | YP_009821607.1 | 58 | 6272.37 | 3.0 | 7.5237 | hypothetical protein | ||
| NC_048177.1 | 3152 | 3325 | + | YP_009821608.1 | 57 | 6347.61 | 4.5 | 11.0888 | hypothetical protein | ||
| NC_048177.1 | 3397 | 3663 | + | YP_009821609.1 | 88 | 9555.40 | -12.5 | 3.7560 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS129 | YP_009821604.1 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300030930_000003|3300030930|Ga0316159_100171 | 42.600 | 9.835E-16 | 69 | 0.907% | IMGVR | phrog_ | |||
| IMGVR_UViG_3300000060_000001|3300000060|PaMGMunAill_000003844 | 60.700 | 1.626E-32 | 117 | 1.000% | IMGVR | phrog_ | |||
| IMGVR_UViG_2228664000_000004|2228664000|2228666509 | 60.700 | 1.626E-32 | 117 | 1.000% | IMGVR | phrog_ | |||
| YP_009821604.1 | 100.000 | 1.341E-55 | 184 | 1.000% | Escherichia phage Lidtsur | Escherichia | NCBI | phrog_ |