| APIS family ID | APIS131 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | CRISPR-Cas evasion by DNA repair | |||||||||||||
| CLAN ID | CLAN055 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:32556263 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF00436.30 | |||||||||||||
| Phrog | phrog_25370,phrog_44,phrog_12631 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | CRISPR–Cas evasion by repairing double-strand DNA breaks via recombination between short sequence repeats | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q93GP7-F1-model_v4 | 1 | 165 | 2 | 160 | 0.7623 | 0.7385 |
| AF-Q2FWF7-F1-model_v4 | 4 | 127 | 1 | 120 | 0.8353 | 0.6925 |
| AF-A0A0H3GZP4-F1-model_v4 | 1 | 167 | 2 | 168 | 0.7139 | 0.6807 |
| AF-Q8DNH4-F1-model_v4 | 4 | 146 | 1 | 131 | 0.7844 | 0.6759 |
| AF-P44409-F1-model_v4 | 1 | 165 | 1 | 158 | 0.6987 | 0.6707 |
| AF-P40947-F1-model_v4 | 1 | 130 | 1 | 132 | 0.8481 | 0.6609 |
| AF-Q5F7Y0-F1-model_v4 | 3 | 167 | 1 | 168 | 0.6675 | 0.656 |
| AF-A0A0H3GL04-F1-model_v4 | 1 | 127 | 2 | 130 | 0.8791 | 0.6532 |
| AF-Q328J8-F1-model_v4 | 4 | 113 | 1 | 104 | 0.8271 | 0.6475 |
| AF-Q327X2-F1-model_v4 | 1 | 165 | 2 | 165 | 0.6571 | 0.6385 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001765131349.pdb | 1 | 111 | 1 | 111 | 0.9607 | 0.7806 |
| MGYP003327574723.pdb | 1 | 115 | 1 | 114 | 0.95 | 0.7792 |
| MGYP001110216961.pdb | 2 | 115 | 1 | 113 | 0.9545 | 0.7792 |
| MGYP001488246086.pdb | 3 | 114 | 1 | 110 | 0.9622 | 0.7777 |
| MGYP003394878357.pdb | 1 | 112 | 1 | 111 | 0.9586 | 0.7771 |
| MGYP001619735162.pdb | 2 | 109 | 1 | 108 | 0.9677 | 0.7771 |
| MGYP000170668048.pdb | 2 | 108 | 1 | 107 | 0.9672 | 0.7741 |
| MGYP003614124538.pdb | 5 | 110 | 1 | 106 | 0.969 | 0.7727 |
| MGYP003392844627.pdb | 1 | 109 | 1 | 109 | 0.9586 | 0.7723 |
| MGYP000925055419.pdb | 3 | 116 | 1 | 114 | 0.9422 | 0.7717 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS131 | YP_008997727.1 | 313 | HMM model | Member alignment |
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