| APIS family ID | APIS132 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | SOS response | |||||||||||||
| CLAN ID | CLAN041 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:31754112 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF06114.18 | |||||||||||||
| Phrog | phrog_87 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | MpaR plays a critical role in the de-repression (induction) of the two phage elements and is sufficient for ϕ10403S induction. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001593591530.pdb | 1 | 150 | 4 | 153 | 0.9818 | 0.966 |
| MGYP003297889933.pdb | 1 | 150 | 2 | 151 | 0.9499 | 0.9329 |
| MGYP000256199055.pdb | 1 | 150 | 2 | 150 | 0.9451 | 0.9315 |
| MGYP000339186829.pdb | 1 | 150 | 3 | 154 | 0.9567 | 0.9314 |
| MGYP001078594949.pdb | 1 | 150 | 2 | 152 | 0.949 | 0.9292 |
| MGYP003474866495.pdb | 1 | 149 | 3 | 151 | 0.9414 | 0.9235 |
| MGYP000140544837.pdb | 1 | 150 | 3 | 154 | 0.9595 | 0.923 |
| MGYP000624096806.pdb | 1 | 150 | 3 | 152 | 0.9437 | 0.9223 |
| MGYP001078031973.pdb | 1 | 150 | 4 | 153 | 0.9456 | 0.9221 |
| MGYP003374469334.pdb | 1 | 150 | 3 | 154 | 0.949 | 0.9214 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS132 | WP_003721739.1 | 107 | HMM model | Member alignment |
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