| APIS family ID | APIS135 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN028 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF18788.6,PF05911.16 | |||||||||||||
| Phrog | phrog_1620 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending restriction-modification (RM) because it belongs to the same clan as family APIS031,APIS143 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000978432647.pdb | 4 | 134 | 1 | 130 | 0.8566 | 0.6851 |
| MGYP001448806754.pdb | 11 | 151 | 1 | 131 | 0.7804 | 0.6322 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS135 | IMGVR_UViG_3300026487_000009|3300026487|Ga0256408_10002085 | 6 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300026487_000009|3300026487|Ga0256408_10002085 | 100.000 | 1.441E-118 | 372 | 1.000% | Leclercia | IMGVR | PF18788 PF05911 | phrog_1620 | |
| IMGVR_UViG_2887663082_000001|2887663082|2887664588 | 41.800 | 1.069E-41 | 150 | 0.966% | Pseudocitrobacter faecalis | IMGVR | PF18788 | phrog_1620 | |
| IMGVR_UViG_2883489344_000002|2883489344|2883493768 | 39.300 | 9.495E-38 | 138 | 0.971% | Chimaeribacter sp005491205 | IMGVR | PF18788 | phrog_ | |
| IMGVR_UViG_2906128962_000004|2906128962|2906129962 | 41.700 | 2.002E-41 | 149 | 0.966% | Citrobacter freundii | IMGVR | PF18788 | phrog_ | |
| IMGVR_UViG_2888264944_000005|2888264944|2888269914 | 37.400 | 1.274E-34 | 129 | 0.971% | Erwinia sp007981265 | IMGVR | PF18788 | phrog_1620 phrog_28615 | |
| IMGVR_UViG_3300047469_000197|3300047469|Ga0495673_0000196_92869_93504 | 39.100 | 3.324E-37 | 137 | 0.966% | IMGVR | PF18788 | phrog_ |