dbAPIS: a database of anti-prokaryotic immune systems

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Seed protein information help

APIS family ID

APIS137

Inhibited defense system

CLAN ID

CLAN042

Seed protein property

Accession ID	Gene name	Protein length	Molecular weight	Isoelectric point	Charge
IMGVR_UViG_3300027863_000098\|3300027863\|Ga0207433_1000259650	gene_page:	255	29724.70	7.0179	3.0

Phage property

Phage	Assembly id
	IMGVR_UViG_3300027863_000098

PMID/References

PDB structures

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Pfam domains

PF10127.14

Phrog

Host taxa

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Gene Location

Start: ; End: ; Strand:

Description

Note

This family does not have seed protein, but we infer its function is defending CBASS, Pycsar and CRISPR–Cas (type III) because it belongs to the same clan as family APIS103 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.9 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence

90 < plddt <=100 ;

70 < plddt <= 90 ;

50 < plddt <= 70 ;

0 <= plddt <= 50 ; Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit	Query start	Query end	Hit start	Hit end	TMscore(ali)	TMscore(avg)
AF-Q60312-F1-model_v4	1	255	1	243	0.8214	0.787
AF-Q9HVK0-F1-model_v4	2	255	23	268	0.743	0.7034
AF-K0EWV7-F1-model_v4	2	253	24	267	0.727	0.6906
AF-Q54QX1-F1-model_v4	1	255	16	281	0.8255	0.5815
AF-Q551X5-F1-model_v4	1	255	100	406	0.8011	0.5295

Structure homologs against by esmdb (html) ; download full result table

Hit	Query start	Query end	Hit start	Hit end	TMscore(ali)	TMscore(avg)
MGYP001616633943.pdb	2	255	1	238	0.9643	0.9251
MGYP000981076716.pdb	1	254	2	243	0.9557	0.9249
MGYP001617474190.pdb	1	253	1	248	0.9406	0.9217
MGYP001075635848.pdb	4	255	1	236	0.9597	0.9214
MGYP000017518225.pdb	4	255	1	242	0.9501	0.9209
MGYP001617491235.pdb	2	254	1	247	0.9408	0.9195
MGYP001601559401.pdb	1	253	1	248	0.9388	0.9194
MGYP001576611608.pdb	1	255	1	251	0.9342	0.919
MGYP000994573949.pdb	1	254	1	250	0.9315	0.9143
MGYP000986579416.pdb	3	254	1	238	0.9522	0.9115

Family information Download help

Fam ID	Seed protein	Member count	Model	Alignment
APIS137	IMGVR_UViG_3300027863_000098\|3300027863\|Ga0207433_1000259650	9	HMM model	Member alignment

Host Taxa distribution

Length distribution

Homology to other families help

Clan ID: CLAN042

APIS137 has no similar APIS family.

Family members, sources, and their hosts help

Results of representative protein blast against members.
Member	pident	evalue	bitscore	qcovs	SourceDB	Pfam	Phrog
IMGVR_UViG_3300027863_000098\|3300027863\|Ga0207433_1000259650	100.000	1.602E-172	530	1.000%	IMGVR	PF10127	phrog_
IMGVR_UViG_3300005573_000069\|3300005573\|Ga0078972_100104756	98.100	1.602E-172	530	1.000%	IMGVR	PF10127	phrog_
IMGVR_UViG_2199352008_000156\|2199352008\|2200474996	43.900	1.932E-53	186	0.922%	IMGVR	PF10127	phrog_
IMGVR_UViG_3300045599_000040\|3300045599\|Ga0455822_00118_46358_47041	43.900	2.950E-54	188	0.933%	IMGVR	PF10127	phrog_
IMGVR_UViG_3300033752_000221\|3300033752\|Ga0373396_000375_67148_67891	43.500	1.932E-53	186	0.933%	IMGVR	PF10127	phrog_
IMGVR_UViG_3300031176_000001\|3300031176\|Ga0310832_10019320	43.500	1.932E-53	186	0.933%	IMGVR	PF10127	phrog_
IMGVR_UViG_3300035660_000010\|3300035660\|Ga0373629_0000767_42694_43407	39.100	4.203E-46	165	0.953%	IMGVR	PF10127	phrog_
IMGVR_UViG_3300033150_001583\|3300033150\|Ga0366835_1000038195	44.000	5.072E-59	202	1.000%	IMGVR	PF10127	phrog_388
IMGVR_UViG_3300018875_000003\|3300018875\|Ga0193608_1000084141	39.600	8.809E-47	167	0.949%	IMGVR	PF10127	phrog_