| APIS family ID | APIS140 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN053 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kosakonia;s__unclassified Kosakonia species | |||||||||||||
| Gene Location | Start: 2223; End: 2504; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending AVAST (Antiviral STAND) because it belongs to the same clan as family APIS129,APIS193 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MW250275 | 1 | 393 | + | MW250275_00001 | 130 | 14659.78 | -6.5 | 4.3216 | SAM-dependent methyltransferase | phrog_2226 | |
| MW250275 | 532 | 1056 | + | MW250275_00002 | 174 | 19280.99 | 4.5 | 8.8900 | hypothetical protein | phrog_1448 | |
| MW250275 | 1119 | 1391 | + | MW250275_00003 | 90 | 9619.96 | -7.0 | 3.8431 | hypothetical protein | ||
| MW250275 | 1464 | 1745 | + | MW250275_00004 | 93 | 10232.26 | -12.0 | 4.0422 | hypothetical protein | ||
| MW250275 | 1819 | 2157 | + | MW250275_00005 | 112 | 11704.96 | -17.0 | 3.5827 | hypothetical protein | ||
| MW250275 | 2223 | 2504 | + | MW250275_00006 | 93 | 9667.85 | -12.0 | 3.7299 | hypothetical protein | ||
| MW250275 | 2543 | 2773 | + | MW250275_00007 | 76 | 8563.50 | -10.0 | 3.9544 | hypothetical protein | ||
| MW250275 | 2842 | 3126 | + | MW250275_00008 | 94 | 9734.94 | -9.0 | 3.8209 | hypothetical protein | ||
| MW250275 | 3129 | 3467 | + | MW250275_00009 | 112 | 12632.38 | -9.0 | 4.2580 | hypothetical protein | ||
| MW250275 | 3470 | 3784 | + | MW250275_00010 | 104 | 11126.98 | -1.0 | 6.0522 | hypothetical protein | ||
| MW250275 | 3793 | 4044 | + | MW250275_00011 | 83 | 9299.28 | -10.0 | 4.0742 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS140 | MW250275_00006 | 5 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| MW250275_00006 | 100.000 | 5.854E-56 | 184 | 1.000% | Kosakonia virus Kc261 | Kosakonia | INPHARED | phrog_ | |
| MN850617_00032 | 91.300 | 2.604E-54 | 180 | 1.000% | Escherichia phage forsur | Escherichia | INPHARED | phrog_ | |
| MN850608_00005 | 70.400 | 6.189E-35 | 124 | 0.925% | Escherichia phage megetsur | Escherichia | INPHARED | phrog_ | |
| IMGVR_UViG_2751185941_000001|2751185941|2753970793 | 71.000 | 2.394E-35 | 125 | 0.925% | Enterobacter bugandensis | IMGVR | phrog_ | ||
| MN850592_00039 | 73.700 | 2.847E-37 | 131 | 0.925% | Escherichia phage aldrigsur | Escherichia | INPHARED | phrog_ |