| APIS family ID | APIS145 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN057 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF00156.32,PF14572.11,PF00156.32,PF14572.11 | |||||||||||||
| Phrog | phrog_619,phrog_619 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Hafniaceae;g__Hafnia;s__unclassified Hafnia species | |||||||||||||
| Gene Location | Start: 28306; End: 29199; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending NAD+ reconstitution pathway (NARP) because it belongs to the same clan as family APIS160 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MW749010 | 26275 | 26529 | + | MW749010_00035 | 84 | 9909.54 | 8.0 | 9.1239 | hypothetical protein | phrog_2993 | |
| MW749010 | 26530 | 26799 | + | MW749010_00036 | 89 | 10670.54 | 7.0 | 9.8021 | hypothetical protein | ||
| MW749010 | 26789 | 27256 | + | MW749010_00037 | 155 | 17703.16 | -1.5 | 5.3011 | Anaerobic ribonucleoside-triphosphate reductase-activating protein | phrog_20267 ; phrog_626 | PF13353.11 ;PF04055.26 |
| MW749010 | 27268 | 27807 | + | MW749010_00038 | 179 | 21385.47 | 17.5 | 10.1679 | hypothetical protein | ||
| MW749010 | 27820 | 28167 | + | MW749010_00039 | 115 | 13255.48 | 8.5 | 9.9122 | hypothetical protein | phrog_4462 | |
| MW749010 | 28306 | 29199 | + | MW749010_00040 | 297 | 33140.13 | -8.5 | 4.9484 | Ribose-phosphate pyrophosphokinase | phrog_619 ; phrog_619 | PF00156.32 ;PF14572.11 ;PF00156.32 ;PF14572.11 |
| MW749010 | 29303 | 29689 | + | MW749010_00041 | 128 | 14497.63 | -13.0 | 3.9892 | hypothetical protein | ||
| MW749010 | 29773 | 30150 | + | MW749010_00042 | 125 | 14066.90 | -10.0 | 4.1871 | hypothetical protein | ||
| MW749010 | 30227 | 32005 | + | MW749010_00043 | 592 | 67266.44 | -14.5 | 5.0643 | nicotinamide phosphoribosyl transferase | phrog_15800 ; phrog_12872 ; phrog_12872 ; phrog_448 ; phrog_448 ; phrog_16547 ; phrog_16547 | PF04095.21 ;PF18127.6 ;PF04095.21 ;PF18127.6 |
| MW749010 | 32055 | 32327 | + | MW749010_00044 | 90 | 10413.79 | -2.0 | 5.4943 | hypothetical protein | ||
| MW749010 | 32370 | 34730 | + | MW749010_00045 | 786 | 91205.20 | 2.5 | 6.7503 | RIIA lysis inhibitor | phrog_612 | PF13589.11 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q58761-F1-model_v4 | 2 | 297 | 6 | 276 | 0.826 | 0.7923 |
| AF-A0A0N4UA03-F1-model_v4 | 2 | 297 | 6 | 288 | 0.8257 | 0.7881 |
| AF-Q9HVC5-F1-model_v4 | 2 | 297 | 10 | 291 | 0.8234 | 0.7875 |
| AF-A0A077Z3R4-F1-model_v4 | 2 | 297 | 10 | 292 | 0.8275 | 0.7855 |
| AF-A0A0D2GSR9-F1-model_v4 | 2 | 297 | 9 | 298 | 0.8224 | 0.7847 |
| AF-O94413-F1-model_v4 | 2 | 297 | 12 | 295 | 0.8278 | 0.7821 |
| AF-A0A0K0EDZ6-F1-model_v4 | 2 | 297 | 10 | 292 | 0.8242 | 0.782 |
| AF-Q5ALK3-F1-model_v4 | 2 | 297 | 12 | 294 | 0.8252 | 0.7811 |
| AF-Q9PP15-F1-model_v4 | 2 | 297 | 10 | 287 | 0.8104 | 0.7789 |
| AF-A0A175VX90-F1-model_v4 | 2 | 297 | 15 | 297 | 0.8258 | 0.7785 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP003190090495.pdb | 2 | 297 | 2 | 294 | 0.9593 | 0.9496 |
| MGYP001122314347.pdb | 1 | 297 | 1 | 292 | 0.923 | 0.9052 |
| MGYP002039457692.pdb | 1 | 297 | 9 | 297 | 0.9078 | 0.8976 |
| MGYP000334889950.pdb | 5 | 297 | 1 | 284 | 0.9282 | 0.8966 |
| MGYP002537967899.pdb | 1 | 297 | 1 | 280 | 0.9204 | 0.8943 |
| MGYP002507122211.pdb | 4 | 297 | 1 | 277 | 0.9278 | 0.8943 |
| MGYP001593485562.pdb | 2 | 297 | 1 | 280 | 0.9287 | 0.8925 |
| MGYP000395058717.pdb | 1 | 297 | 1 | 271 | 0.9421 | 0.8908 |
| MGYP000586329687.pdb | 4 | 297 | 1 | 279 | 0.9223 | 0.8804 |
| MGYP003362776642.pdb | 3 | 297 | 1 | 277 | 0.9 | 0.88 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS145 | MW749010_00040 | 6 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| MGV-GENOME-0355376_103 | 86.000 | 4.442E-172 | 531 | 1.000% | MGV | PF00156 PF14572 | phrog_619 | ||
| MW749010_00040 | 100.000 | 6.605E-199 | 608 | 1.000% | Hafnia phage vB_HpaM_SarahDanielle | Hafnia | INPHARED | PF00156 PF14572 PF00156 PF14572 | phrog_619 phrog_619 |
| MW749004_00040 | 85.900 | 6.087E-172 | 531 | 1.000% | Hafnia phage vB_HpaM_Zyzzx | Hafnia | INPHARED | PF00156 PF14572 | phrog_619 |
| uvig_90087_82 | 86.000 | 4.442E-172 | 531 | 1.000% | GPD | PF00156 PF14572 | phrog_619 | ||
| OK283618_00105 | 86.700 | 7.386E-174 | 536 | 1.000% | Listeria phage LPML1 | Listeria | INPHARED | PF00156 PF14572 | phrog_619 |
| MGV-GENOME-0357458_31 | 85.900 | 6.087E-172 | 531 | 1.000% | MGV | PF00156 PF14572 | phrog_619 |