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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS149
Inhibited defense system
CLAN ID CLAN056
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300025415_000127|3300025415|Ga0208868_100032919
gene_page: 270 30783.80 6.3540 -0.5
Phage property
Phage Assembly id
IMGVR_UViG_3300025415_000127
PMID/References
PDB structures ;
Pfam domains PF03837.19
Phrog phrog_12233,phrog_252,phrog_8375,phrog_10056
Host taxa ;;;;;;
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending CRISPR-Cas evasion by DNA repair because it belongs to the same clan as family APIS133 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.66 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

Structure homologs against by afdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
AF-Q32GM7-F1-model_v4 1 237 2 240 0.7335 0.7117

Structure homologs against by esmdb (html) ; download full result table

Hit Query start Query end Hit start Hit end TMscore(ali) TMscore(avg)
MGYP001022669891.pdb 6 191 1 187 0.9296 0.7799
MGYP001042576686.pdb 1 200 8 198 0.8927 0.7664
MGYP001049722605.pdb 5 193 10 202 0.9005 0.7588
MGYP001756875362.pdb 1 199 2 209 0.8746 0.7566
MGYP004001127659.pdb 3 197 1 178 0.9158 0.7554
MGYP002717183559.pdb 1 229 5 221 0.8124 0.7534
MGYP003480204305.pdb 1 203 2 184 0.9003 0.7529
MGYP000650291425.pdb 1 195 7 182 0.9039 0.7517
MGYP000122684039.pdb 1 251 7 192 0.8773 0.7438
MGYP002325959951.pdb 1 206 6 190 0.8797 0.7424

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS149 IMGVR_UViG_3300025415_000127|3300025415|Ga0208868_100032919 4 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       help

Clan ID: CLAN056

APIS149 has no similar APIS family.

Family members, sources, and their hosts        help

Results of representative protein blast against members.
Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300025415_000127|3300025415|Ga0208868_100032919 100.000 6.799E-183 561 1.000% IMGVR PF03837 phrog_8375 phrog_252 phrog_10056 phrog_12233
IMGVR_UViG_3300006107_000005|3300006107|Ga0007836_100004137 98.100 6.799E-183 561 1.000% IMGVR PF03837 phrog_8375 phrog_252 phrog_10056 phrog_12233
IMGVR_UViG_3300046009_009959|3300046009|Ga0485184_000414_15169_15945 58.900 2.923E-63 215 0.693% Enterobacteriaceae IMGVR PF03837 phrog_8375 phrog_252 phrog_10056 phrog_12233
IMGVR_UViG_3300037418_001489|3300037418|Ga0395900_0026707_255_1064 50.500 2.623E-62 213 0.830% IMGVR PF03837 phrog_8375 phrog_252 phrog_10056 phrog_12233