| APIS family ID | APIS153 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | Dnd | |||||||||||||
| CLAN ID | CLAN059 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | PMID:35760840 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio; | |||||||||||||
| Gene Location | Start: 26975; End: 27130; Strand: - | |||||||||||||
| Description | Two genes (p0020 and p0021) provide resistance to the Dnd system (anti-Dnd), p0021 encodes a protein of unknown function. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MW824398.1 | 22038 | 22706 | - | QZI91753.1 | 222 | 25743.26 | 20.0 | 9.9888 | recombination protein | PF05766.17 | |
| MW824398.1 | 23385 | 23822 | - | QZI91754.1 | 145 | 16963.32 | 3.0 | 7.3999 | hypothetical protein | phrog_319 | PF07105.16 |
| MW824398.1 | 24112 | 25551 | - | QZI91755.1 | 479 | 54533.95 | -6.5 | 5.3367 | Dam methyltransferase with PAPS reductase domain | phrog_15238 ; phrog_111 ; phrog_22740 ; phrog_6083 ; phrog_33262 | PF05869.16 ;PF01507.24 |
| MW824398.1 | 25548 | 26138 | - | QZI91756.1 | 196 | 22448.71 | 1.0 | 6.8420 | hypothetical protein | phrog_10105 | PF20081.4 |
| MW824398.1 | 26140 | 26982 | - | QZI91757.1 | 280 | 32180.26 | -3.5 | 5.2869 | hypothetical protein | phrog_12556 ; phrog_12556 ; phrog_21472 ; phrog_21472 | |
| MW824398.1 | 26975 | 27130 | - | QZI91758.1 | 51 | 5877.84 | 4.5 | 10.4077 | hypothetical protein | ||
| MW824398.1 | 27275 | 27457 | + | QZI91759.1 | 60 | 6643.66 | -3.5 | 4.3997 | hypothetical protein | phrog_6168 ; phrog_19938 | |
| MW824398.1 | 27459 | 27764 | + | QZI91760.1 | 101 | 11326.87 | -6.5 | 4.4380 | hypothetical protein | ||
| MW824398.1 | 27757 | 28512 | + | QZI91761.1 | 251 | 28095.59 | -3.5 | 5.3607 | viral recombinase | PF04404.17 | |
| MW824398.1 | 28514 | 30247 | + | QZI91762.1 | 577 | 65970.39 | -23.5 | 4.7301 | viral recombinase | phrog_7655 | PF09588.15 |
| MW824398.1 | 30304 | 30849 | + | QZI91763.1 | 181 | 20225.08 | -7.5 | 4.8037 | RNase T/H | PF00929.29 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS153 | QZI91758.1 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300017527_000128|3300017527|Ga0186782_121112319 | 54.100 | 3.856E-11 | 53 | 0.961% | IMGVR | phrog_ | |||
| IMGVR_UViG_3300037502_002318|3300037502|Ga0310151_0000541_27711_27878 | 81.100 | 6.301E-22 | 84 | 0.961% | IMGVR | phrog_ | |||
| QZI91758.1 | 100.000 | 9.377E-27 | 98 | 1.000% | Vibrio phage 44E38.1 | Vibrio | NCBI | phrog_ | |
| IMGVR_UViG_3300006919_000911|3300006919|Ga0070746_1000106826 | 61.700 | 3.452E-14 | 62 | 0.961% | IMGVR | phrog_ |