| APIS family ID | APIS155 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN042 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF10127.14,PF10127.14 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Microbacterium;s__unclassified Microbacterium species | |||||||||||||
| Gene Location | Start: 113275; End: 114018; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending CBASS, Pycsar and CRISPR–Cas (type III) because it belongs to the same clan as family APIS103 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| OK040793 | 111151 | 111630 | - | OK040793_00182 | 159 | 16410.99 | -9.0 | 4.0071 | hypothetical protein | ||
| OK040793 | 111724 | 111993 | - | OK040793_00183 | 89 | 10078.29 | -2.5 | 5.4991 | hypothetical protein | phrog_12646 | |
| OK040793 | 112010 | 112471 | - | OK040793_00184 | 153 | 17414.16 | 14.0 | 10.2490 | hypothetical protein | ||
| OK040793 | 112557 | 112823 | + | OK040793_00185 | 88 | 10384.84 | 5.5 | 9.0005 | hypothetical protein | ||
| OK040793 | 112965 | 113192 | + | OK040793_00186 | 75 | 8901.51 | 7.0 | 10.7639 | hypothetical protein | ||
| OK040793 | 113275 | 114018 | + | OK040793_00187 | 247 | 27943.79 | -3.5 | 5.4100 | nucleotidyltransferase | PF10127.14 ;PF10127.14 | |
| OK040793 | 114005 | 114184 | + | OK040793_00188 | 59 | 6396.29 | -4.0 | 4.1528 | hypothetical protein | ||
| OK040793 | 114177 | 114716 | + | OK040793_00189 | 179 | 20401.06 | -7.5 | 4.6785 | hypothetical protein | PF13563.11 | |
| OK040793 | 114716 | 114928 | + | OK040793_00190 | 70 | 7998.97 | -9.0 | 3.9009 | hypothetical protein | ||
| OK040793 | 114993 | 115142 | + | OK040793_00191 | 49 | 5464.11 | -2.0 | 4.4809 | hypothetical protein | ||
| OK040793 | 115164 | 115838 | + | OK040793_00192 | 224 | 25479.91 | 1.0 | 6.6402 | phosphoesterase | PF12850.12 ;PF00149.33 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-Q60312-F1-model_v4 | 1 | 244 | 3 | 243 | 0.8113 | 0.7858 |
| AF-Q9HVK0-F1-model_v4 | 1 | 246 | 27 | 269 | 0.7632 | 0.7108 |
| AF-Q54QX1-F1-model_v4 | 1 | 247 | 22 | 605 | 0.8524 | 0.5948 |
| AF-Q551X5-F1-model_v4 | 1 | 247 | 105 | 773 | 0.8245 | 0.5404 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP001568823508.pdb | 2 | 245 | 1 | 244 | 0.9803 | 0.9697 |
| MGYP003603915147.pdb | 4 | 246 | 1 | 243 | 0.9644 | 0.9444 |
| MGYP000240412689.pdb | 1 | 246 | 1 | 246 | 0.9534 | 0.9417 |
| MGYP000486457326.pdb | 1 | 244 | 1 | 244 | 0.9469 | 0.9322 |
| MGYP001563042630.pdb | 1 | 247 | 1 | 258 | 0.9538 | 0.9228 |
| MGYP000116634849.pdb | 1 | 247 | 1 | 252 | 0.9472 | 0.9218 |
| MGYP001597739764.pdb | 4 | 243 | 1 | 244 | 0.9377 | 0.9211 |
| MGYP001501606790.pdb | 1 | 245 | 7 | 256 | 0.9434 | 0.919 |
| MGYP001559568787.pdb | 1 | 246 | 1 | 258 | 0.9594 | 0.9178 |
| MGYP001584754181.pdb | 5 | 246 | 1 | 246 | 0.9304 | 0.9173 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS155 | OK040793_00187 | 4 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300023301_000008|3300023301|Ga0209414_100001789 | 59.600 | 3.863E-84 | 274 | 0.955% | IMGVR | PF10127 | phrog_ | ||
| IMGVR_UViG_3300000405_000004|3300000405|LV_Brine_h2_0102DRAFT_100001340 | 59.600 | 3.863E-84 | 274 | 0.955% | IMGVR | PF10127 | phrog_ | ||
| OK040793_00187 | 100.000 | 9.603E-165 | 507 | 1.000% | Microbacterium phage Zooman | Microbacterium | INPHARED | PF10127 PF10127 | phrog_ |
| IMGVR_UViG_3300033068_000352|3300033068|Ga0364484_10176107 | 44.800 | 1.765E-55 | 192 | 0.947% | IMGVR | PF10127 | phrog_ |