| APIS family ID | APIS166 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | restriction-modification (RM) | |||||||||||||
| CLAN ID | CLAN039 | |||||||||||||
| Seed protein property |
|
|||||||||||||
| Phage property |
|
|||||||||||||
| PMID/References | PMID:32556263 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | PF07728.19,PF08406.15 | |||||||||||||
| Phrog | ||||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio; | |||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | vcrx089 and vcrx090 promote resistance against type I restriction-modification. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| AF-A0A0H3H502-F1-model_v4 | 2 | 321 | 1 | 281 | 0.9421 | 0.8754 |
| AF-Q2G2J8-F1-model_v4 | 37 | 317 | 1 | 263 | 0.92 | 0.8275 |
| AF-Q51481-F1-model_v4 | 30 | 321 | 1 | 260 | 0.9036 | 0.8062 |
| AF-O53705-F1-model_v4 | 4 | 321 | 1 | 297 | 0.7911 | 0.7488 |
| AF-X8F327-F1-model_v4 | 3 | 322 | 5 | 289 | 0.7921 | 0.737 |
| AF-P71922-F1-model_v4 | 3 | 322 | 7 | 291 | 0.7876 | 0.735 |
| AF-K0EW51-F1-model_v4 | 2 | 321 | 8 | 294 | 0.7827 | 0.7342 |
| AF-K0FAA2-F1-model_v4 | 3 | 319 | 2 | 288 | 0.7827 | 0.733 |
| AF-P33348-F1-model_v4 | 1 | 322 | 26 | 357 | 0.7825 | 0.7259 |
| AF-Q9I0D5-F1-model_v4 | 6 | 314 | 1 | 277 | 0.7806 | 0.7168 |
| Hit | Query start | Query end | Hit start | Hit end | TMscore(ali) | TMscore(avg) |
|---|---|---|---|---|---|---|
| MGYP000487869468.pdb | 1 | 322 | 1 | 322 | 0.9877 | 0.9849 |
| MGYP000467473224.pdb | 1 | 322 | 1 | 322 | 0.9841 | 0.9803 |
| MGYP001281949795.pdb | 1 | 322 | 1 | 322 | 0.9804 | 0.9763 |
| MGYP000704697880.pdb | 1 | 322 | 2 | 323 | 0.9795 | 0.974 |
| MGYP000653039591.pdb | 1 | 322 | 5 | 328 | 0.9783 | 0.9592 |
| MGYP000218291794.pdb | 2 | 322 | 1 | 331 | 0.9715 | 0.953 |
| MGYP001389673498.pdb | 1 | 322 | 6 | 328 | 0.9676 | 0.9506 |
| MGYP003646054441.pdb | 1 | 322 | 1 | 316 | 0.9525 | 0.9457 |
| MGYP001467461195.pdb | 1 | 322 | 6 | 325 | 0.9563 | 0.9451 |
| MGYP001557083938.pdb | 1 | 322 | 1 | 313 | 0.9562 | 0.9436 |
| Fam ID | Seed protein | Member count | Model | Alignment | APIS166 | YP_008997725.1 | 7 | HMM model | Member alignment |
|---|
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300025061_000136|3300025061|Ga0208300_1029441 | 58.700 | 5.041E-111 | 356 | 0.972% | IMGVR | PF07728 PF08406 PF13401 | phrog_ | ||
| IMGVR_UViG_3300006690_000020|3300006690|Ga0031681_11116375 | 79.700 | 3.272E-170 | 527 | 1.000% | Pseudomonadales | IMGVR | PF07728 PF08406 | phrog_ | |
| YP_008997725.1 | 100.000 | 9.981E-214 | 653 | 1.000% | Vibrio cholerae | Vibrio | NCBI | PF07728 PF08406 | phrog_ |
| IMGVR_UViG_2744054965_000003|2744054965|2746364033 | 95.800 | 6.613E-213 | 650 | 1.000% | Serratia nevei | IMGVR | PF07728 PF08406 | phrog_ | |
| IMGVR_UViG_3300002898_001291|3300002898|draft_100396205 | 76.400 | 2.359E-157 | 490 | 0.975% | IMGVR | PF07728 PF08406 | phrog_ | ||
| IMGVR_UViG_3300006192_000655|3300006192|Ga0075011_100108215 | 69.600 | 5.937E-144 | 451 | 0.988% | IMGVR | PF07728 PF08406 | phrog_ | ||
| IMGVR_UViG_3300011314_000013|3300011314|Ga0138382_10974701 | 79.700 | 3.272E-170 | 527 | 1.000% | Pseudomonadales | IMGVR | PF07728 PF08406 | phrog_ |